Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55580 566 / 0 Regulator of chromosome condensation (RCC1) family protein (.1) AT3G53830 501 / 2e-175 Regulator of chromosome condensation (RCC1) family protein (.1) AT5G63860 114 / 2e-27 UVR8 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) AT5G12350 89 / 2e-18 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G19420 89 / 3e-18 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) AT3G23270 85 / 4e-17 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G76950 85 / 4e-17 PRAF1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G42140 85 / 4e-17 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT4G14368 85 / 5e-17 Regulator of chromosome condensation (RCC1) family protein (.1) AT3G47660 79 / 3e-15 Regulator of chromosome condensation (RCC1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G199100 [exp] 774 / 0 AT3G55580 564 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.016G101700 [exp] 516 / 0 AT3G53830 547 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.006G089901 [exp] 119 / 3e-32 AT3G53830 129 / 1e-36 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.007G100200 [exp] 112 / 9e-27 AT5G63860 738 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Potri.001G276900 [exp] 100 / 3e-22 AT5G19420 1483 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.003G197600 [exp] 100 / 3e-22 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.T124906 [exp] 100 / 3e-22 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.009G071800 [exp] 98 / 2e-21 AT5G19420 1610 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.001G026900 [exp] 94 / 5e-20 AT5G19420 1281 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004700 [exp] 609 / 0 AT3G55580 603 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10040266 [exp] 593 / 0 AT3G55580 588 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10029536 [exp] 108 / 4e-25 AT5G63860 642 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10039618 [exp] 107 / 6e-25 AT5G63860 715 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10037192 [exp] 100 / 9e-22 AT1G69710 986 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10036737 [exp] 99 / 2e-21 AT1G69710 974 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10024157 [exp] 97 / 8e-21 AT5G19420 1279 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10039525 [exp] 95 / 2e-20 AT5G19420 1245 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10036030 [exp] 95 / 3e-20 AT5G19420 1644 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10009701 [exp] 95 / 3e-20 AT5G19420 1567 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00415 [poplar] [flax] RCC1 Regulator of chromosome condensation (RCC1) repeat
Representative CDS sequence Show only first row Show all	>Potri.008G059800.2 pacid=42808448 polypeptide=Potri.008G059800.2.p locus=Potri.008G059800 ID=Potri.008G059800.2.v4.1 annot-version=v4.1 ATGAATGGGGAGCGAAAGGAAGAGGGGGTGGTGAACATGGATGTGCATAATGAGAAATTGGTGTATATGTGGGGATATTTACCTGGTGCTTTGCCACAAA GGTCACCGATTTTGTCTCCCCTTGCTGTTAGGTCTACTGTGTACGCTTGGAAGGACGTCTGTGGCGGCGGTTGCGGTTTTGCCATGGCCATTTCTGAGTC TGGAAAGCTCATTACATGGGGTTCAACAGATGATCTAGGTCAAAGCTATGTCACATCCGGGAAGCATGGGGAAACTCCCGAGGCTTTCCCTCTCCCAACA GAGGCTTCCATTGTAAAAGCTGCAGCTGGCTGGGCACATTGTGTAGCAGCTACAGGCAATGGAGAAGTCTATACATGGGGATGGAAAGAATGTATTCCCT CAGGGAAAGTCTTTAGTGATCCATCAGGGGCGGGAGGAATGGAGAAGGATGTGTTTGAAAGGCAGAATCTTTTTTTTACAGAGCAAGGCAGCCCTCGCTC TCAAGGTCCGAGGTCCAGTGGTGGAAGTGGAACTTTGTCTGGACTTGATGGTAGAGGAAGTAAAGATGAAAGTACAAAGAGGCGGAGAATATCATCAGCA AAACAAGCAGCTGAAAGCTCATCCACTGGAGATGAAACACCCTCAGCTTTCCCATGCCTAGTAACACTTAACCCTGGAGTGAGGATTGTCACTGTTTCTG CTGGCGGGCGCCACACTTTAACATTGTCAGATATAGGACAGGTGTGGGGTTGGGGCTATGGTGGCGAAGGGCAGCTTGGTTTGGGCTCCCGAATACGGAT GGTGTCCTCTCCTCATCCCATACCTTGCATTGACTCTTCTTATGGAAAAGAGAGAGATGCAGTGCTTTCTCGAGGGGGCATGACTTCAGAGGGACAGGGT TTTAGAGTTCCTGGAACTTATGTTAAAGGGATCGCTTGTGGAGGTCGACACAGTGCAGTAATTACAGATGCTGGAGCATTACTTACTTTTGGCTGGGGAC TTTATGGACAGTGTGGTCAAGGAAGCACAGATGATGAGTTAAGCCCTACTTGTGTATCTTCCTTGCTGGGAATTAGGATAGAGGGAGTTGCCGCAGGGCT ATGGCATACAGTCTGTGTTTCTGCTGATGGTGATGTCTACACATTTGGTGGGAACCAGTTTGGACAGTTGGGAACTGGTGGTGACCAAGCAGAGACTCTT CCCAGACTCTTGGAAGCTCCGAGCTTGGAAAATATACATGCAAAAACTATTTCTTGTGGGGCTCGCCACAGTACTATAATTTCAGAGGATGGAAAAGTGT TCTGTTGGGGCTGGAACAAGTATGGCCAGCTTGGCTTGGGTGATGTGATTGACCGCAATGTTCCTTCTCAAGTTACCATTGATGGCTGTGTCCCTAAAAA TGTAGCATGTGGCTGGTGGCATACCCTACTTCTGGCCGAGTCACCTACCTGA
AA sequence Show only first row Show all	>Potri.008G059800.2 pacid=42808448 polypeptide=Potri.008G059800.2.p locus=Potri.008G059800 ID=Potri.008G059800.2.v4.1 annot-version=v4.1 MNGERKEEGVVNMDVHNEKLVYMWGYLPGALPQRSPILSPLAVRSTVYAWKDVCGGGCGFAMAISESGKLITWGSTDDLGQSYVTSGKHGETPEAFPLPT EASIVKAAAGWAHCVAATGNGEVYTWGWKECIPSGKVFSDPSGAGGMEKDVFERQNLFFTEQGSPRSQGPRSSGGSGTLSGLDGRGSKDESTKRRRISSA KQAAESSSTGDETPSAFPCLVTLNPGVRIVTVSAGGRHTLTLSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHPIPCIDSSYGKERDAVLSRGGMTSEGQG FRVPGTYVKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPTCVSSLLGIRIEGVAAGLWHTVCVSADGDVYTFGGNQFGQLGTGGDQAETL PRLLEAPSLENIHAKTISCGARHSTIISEDGKVFCWGWNKYGQLGLGDVIDRNVPSQVTIDGCVPKNVACGWWHTLLLAESPT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55580			Regulator of chromosome conden...		Potri.008G059800 [exp]	0	1
AT3G55580			Regulator of chromosome conden...		Potri.010G199100 [exp]	1.00	0.7736
AT5G64170			dentin sialophosphoprotein-rel...		Potri.001G205800 [exp]	3.74	0.7386
AT1G68140			Protein of unknown function (D...		Potri.003G021800 [exp]	10.95	0.6500
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Potri.014G106800 [exp]	10.95	0.6919
AT4G13640	GARP	UNE16	unfertilized embryo sac 16, Ho...		Potri.017G054800 [exp]	20.12	0.7079
AT3G54500			unknown protein		Potri.001G025100 [exp]	22.22	0.5992
AT1G22750			unknown protein		Potri.005G198600 [exp]	22.27	0.6217
AT5G42960			unknown protein		Potri.014G181000 [exp]	26.64	0.6780
AT5G67360		ARA12	Subtilase family protein (.1)		Potri.002G120400 [exp]	28.19	0.6234
AT3G26744	bHLH	SCRM, ATICE1, I...	SCREAM, A. THALIANA INDUCER OF...		Potri.015G105200 [exp]	35.72	0.6448

Compare expression of checked genes

Potri.008G059800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.