Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02070 628 / 0 Protein kinase family protein (.1) AT3G53840 569 / 0 Protein kinase superfamily protein (.1) AT1G21270 295 / 3e-90 WAK2 wall-associated kinase 2 (.1) AT1G79670 291 / 9e-89 WAKL22, RFO1 RESISTANCE TO FUSARIUM OXYSPORUM 1, Wall-associated kinase family protein (.1.2) AT1G69730 291 / 3e-88 Wall-associated kinase family protein (.1) AT2G23450 287 / 1e-87 Protein kinase superfamily protein (.1.2) AT1G79680 288 / 4e-87 ATWAKL10 WALL ASSOCIATED KINASE (WAK)-LIKE 10 (.1) AT1G21230 285 / 1e-86 WAK5 wall associated kinase 5 (.1) AT1G21240 284 / 6e-86 WAK3 wall associated kinase 3 (.1) AT1G21210 283 / 1e-85 WAK4 wall associated kinase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G090200 [exp] 671 / 0 AT5G02070 783 / 0.0 Protein kinase family protein (.1) Potri.006G118500 [exp] 575 / 0 AT5G02070 577 / 0.0 Protein kinase family protein (.1) Potri.003G186100 [exp] 307 / 9e-95 AT1G16260 625 / 0.0 Wall-associated kinase family protein (.1.2) Potri.001G040756 [exp] 295 / 2e-94 AT1G69730 448 / 3e-152 Wall-associated kinase family protein (.1) Potri.005G130900 [exp] 301 / 5e-93 AT2G23450 773 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G039200 [exp] 296 / 1e-90 AT1G16260 642 / 0.0 Wall-associated kinase family protein (.1.2) Potri.001G038525 [exp] 294 / 7e-90 AT1G16260 642 / 0.0 Wall-associated kinase family protein (.1.2) Potri.001G039450 [exp] 294 / 7e-90 AT1G79670 613 / 0.0 RESISTANCE TO FUSARIUM OXYSPORUM 1, Wall-associated kinase family protein (.1.2) Potri.001G040628 [exp] 293 / 2e-89 AT1G16260 612 / 0.0 Wall-associated kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014387 [exp] 522 / 3e-179 AT5G02070 493 / 8e-168 Protein kinase family protein (.1) Lus10008105 [exp] 284 / 2e-86 AT1G16120 419 / 3e-137 wall associated kinase-like 1 (.1) Lus10004504 [exp] 276 / 8e-84 AT1G16130 411 / 5e-134 wall associated kinase-like 2 (.1) Lus10000741 [exp] 278 / 9e-84 AT2G23450 697 / 0.0 Protein kinase superfamily protein (.1.2) Lus10019657 [exp] 265 / 1e-79 AT2G23450 637 / 0.0 Protein kinase superfamily protein (.1.2) Lus10032741 [exp] 266 / 2e-79 AT2G23450 578 / 0.0 Protein kinase superfamily protein (.1.2) Lus10021003 [exp] 244 / 2e-73 AT1G79620 549 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10022432 [exp] 248 / 5e-73 AT1G18390 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10038174 [exp] 246 / 7e-73 AT5G48740 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034085 [exp] 247 / 1e-72 AT1G16130 526 / 5e-179 wall associated kinase-like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF13947 [poplar] [flax] GUB_WAK_bind Wall-associated receptor kinase galacturonan-binding
Representative CDS sequence Show only first row Show all	>Potri.008G059900.1 pacid=42806389 polypeptide=Potri.008G059900.1.p locus=Potri.008G059900 ID=Potri.008G059900.1.v4.1 annot-version=v4.1 ATGAAACTACCACCACATCGCCTCCTCCTCGCGGCGATCCTGCTCCTAAGATGCGCCATGTGCACATTCTCAGCCAAAAACTGCCCCAACTGTGGCACCA CCCCAGTCCCCTACCCATTTAGCACTGCTCCTGCATGCGGGGATCCACAATACAAGATCAGGTGCAATTCAGGCACCCTCTTGTTTGATACACTCAACAG CTCCTATCCGGTCATGTCCATAAATCCATCCATCCAACGGCTAGTGATCCAACCAGCCAGTCTCTTACCAAACACATGTGTCACGTCTGATTACATCTAC GAAGGTATATCGTTAAACGAGAGCTTACCTTTTAACATCACAAGTGATAACACCATCATGTTTTTGAACTGTACGGAGTCGTTGCTTAGATCACCGTTGA ACTGTACCTCAACCAGTTTGTGTCACGTGTACGTTAATAGTACCAAAGGGGAGGCTCCTTGTCAAGCTGCTCCTATTTGTTGTACTTTTAGGGCAGGCGG GTCATCGACGGCGCATAGAATAATGGTAAGAGACACCGGGTGCAGGGCTTACACTAGTTTTGTTGATTTGGATTCGGTTTTGCCCGTGGATAAGTGGTCT AACCCGGGACTGGCAATCGAGTGGGTGCTGCCTCAGGAACCGGTTTGTGGGTCTCAGGCTGACTGTGATGGGAATTCTACTTGTGGGCCCGCTGCAAATC TGAGTGGTGTCAGGAGGTGTTACTGTACAGGTGGACTTCACTGGGATCCGATTCAAGGAATTTGTGCTCATGATGCTACGTGTCAAAATGATGGGAGTTG TGGTGGATCAACAAAGACTGCTCTCATTGCTGGTTTAACATCTGGGATTGGTTTGACTCTTTTGGTAATCGTCATATCTGTCCTGCTCTATAAACGCCGT AGACGGATCAAAGAAGCGCAAGAACGCCTGGCTAGAGAACGTGAAGAGATCCTGAACGCGGGTGGAAGCAGAGCAGCAAAAATCTTCACAGGCAAACAGA TAAAGAAGGCTACAAACAATTTCTCAAAAGACCGCCTATTAGGAGCCGGTGGCTATGGTGAAGTTTTTAAAGGCATTCTTGATGATGGCACAGTAGTAGC TGTCAAGTGTGCCAAGCTTGGAAACACCAAGGGAACTGACCAGGTGCTCAATGAGGTCCGAATTCTATGCCAAGTCAATCATAGAAGCCTTGTATGCTTG CTTGGTTGCTGTGTGGAGCTTCAGCAACCTATACTCGTTTATGAGTACATTGAAAATGGAAATCTTCTTGACCGTCTACAAGGTCTAAAACCTGATGGAA AAAGCCAACTGTCTTGGTTACATCGCCTCCAAATTGCTCATGATACTGCTGATGGTCTTGCTTACCTGCATTTCTCAGCTGTTCCTCCAATATATCATCG AGACGTCAAGTCAAGCAATATACTTCTCGATGAGAAATTGAATGCCAAAGTTTCGGATTTCGGATTGTCAAGGTTAGCTCATAGTGATTTGAGTCACATA TCAACCTGTGCCCAAGGCACTCTAGGGTATCTCGATCCTGAGTATTACAGGAAATATCAGTTGACTGATAAGAGCGATGTTTATAGTTTTGGGGTTGTGT TGTTGGAGCTATTGACTTCTCAAAAGGCATTAGATTTTACTAGACCGGAAGATGATATAAACCTGGCAGTTTATGTGCAGAGGATGATGGAAGAGGAAAA GCTAATGGATGTGATAGACCCAATGCTAAAGGTGAAGGCGAGCTCTCTGCACCTTGAGACCGTTAAGGCATTGGCATTTCTGGCTTTGAGTTGTATAGAG GAAAAGAGACAGAATAGGCCTTCTATGAAAGAAGTTGCTGAGGAAATTGAGTACATTACGACTATTGCAACAGCAAGGGAGGTCGAAAACTAG
AA sequence Show only first row Show all	>Potri.008G059900.1 pacid=42806389 polypeptide=Potri.008G059900.1.p locus=Potri.008G059900 ID=Potri.008G059900.1.v4.1 annot-version=v4.1 MKLPPHRLLLAAILLLRCAMCTFSAKNCPNCGTTPVPYPFSTAPACGDPQYKIRCNSGTLLFDTLNSSYPVMSINPSIQRLVIQPASLLPNTCVTSDYIY EGISLNESLPFNITSDNTIMFLNCTESLLRSPLNCTSTSLCHVYVNSTKGEAPCQAAPICCTFRAGGSSTAHRIMVRDTGCRAYTSFVDLDSVLPVDKWS NPGLAIEWVLPQEPVCGSQADCDGNSTCGPAANLSGVRRCYCTGGLHWDPIQGICAHDATCQNDGSCGGSTKTALIAGLTSGIGLTLLVIVISVLLYKRR RRIKEAQERLAREREEILNAGGSRAAKIFTGKQIKKATNNFSKDRLLGAGGYGEVFKGILDDGTVVAVKCAKLGNTKGTDQVLNEVRILCQVNHRSLVCL LGCCVELQQPILVYEYIENGNLLDRLQGLKPDGKSQLSWLHRLQIAHDTADGLAYLHFSAVPPIYHRDVKSSNILLDEKLNAKVSDFGLSRLAHSDLSHI STCAQGTLGYLDPEYYRKYQLTDKSDVYSFGVVLLELLTSQKALDFTRPEDDINLAVYVQRMMEEEKLMDVIDPMLKVKASSLHLETVKALAFLALSCIE EKRQNRPSMKEVAEEIEYITTIATAREVEN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G02070			Protein kinase family protein ...		Potri.008G059900 [exp]	0	1
AT5G36220		CYP91A1, CYP81D...	CYTOCHROME P450 91A1, cytochro...		Potri.005G144000 [exp]	7.21	0.9106	IFS1.49
AT1G13970			Protein of unknown function (D...		Potri.010G163100 [exp]	7.34	0.8737
					Potri.001G130800 [exp]	12.80	0.9146
AT5G61820			unknown protein		Potri.015G108800 [exp]	15.65	0.8916
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125401 [exp]	23.62	0.8952
AT1G61560		ATMLO6, MLO6	MILDEW RESISTANCE LOCUS O 6, S...		Potri.010G220500 [exp]	25.74	0.8770
AT4G10500			2-oxoglutarate (2OG) and Fe(II...		Potri.011G164200 [exp]	27.45	0.8592
AT1G65610		ATGH9A2 ,KOR2	KORRIGAN 2, ARABIDOPSIS THALIA...		Potri.008G079500 [exp]	28.42	0.8930
AT4G02860			Phenazine biosynthesis PhzC/Ph...		Potri.010G175700 [exp]	31.46	0.8779
AT1G08930		ERD6	EARLY RESPONSE TO DEHYDRATION ...		Potri.013G027700 [exp]	35.07	0.8913

Compare expression of checked genes

Potri.008G059900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.