Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-EIF3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11400 422 / 4e-150 ATEIF3G1, EIF3G1 eukaryotic translation initiation factor 3G1 (.1.2) AT5G06000 344 / 2e-119 ATEIF3G2, EIF3G2 ARABIDOPSIS THALIANA EUKARYOTIC TRANSLATION INITIATION FACTOR 3G2, eukaryotic translation initiation factor 3G2 (.1) AT3G14100 64 / 3e-11 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G54080 63 / 4e-11 UBP1A oligouridylate-binding protein 1A (.1.2) AT4G34110 60 / 5e-10 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) AT1G55310 59 / 5e-10 ATSCL33, SR33, At-SCL33 SC35-like splicing factor 33 (.1.2.3) AT3G23830 57 / 7e-10 AtGRP4, GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 (.1.2) AT3G13570 57 / 2e-09 SCL30A, At-SCL30A SC35-like splicing factor 30A (.1) AT5G64200 56 / 7e-09 ATSC35, At-SC35 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) AT5G54580 54 / 7e-09 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G199000 [exp] 493 / 5e-178 AT3G11400 422 / 4e-150 eukaryotic translation initiation factor 3G1 (.1.2) Potri.001G304000 [exp] 62 / 1e-10 AT4G34110 837 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.006G139300 [exp] 61 / 2e-10 AT1G17370 580 / 0.0 oligouridylate binding protein 1B (.1.2) Potri.011G130300 [exp] 59 / 2e-10 AT5G54580 161 / 2e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G062700 [exp] 60 / 7e-10 AT1G22760 638 / 0.0 poly(A) binding protein 3 (.1) Potri.009G120900 [exp] 59 / 1e-09 AT2G21440 750 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G048300 [exp] 57 / 1e-09 AT1G51510 134 / 1e-39 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G409800 [exp] 56 / 1e-09 AT5G54580 174 / 2e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.005G198500 [exp] 59 / 2e-09 AT1G22760 623 / 0.0 poly(A) binding protein 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030482 [exp] 436 / 1e-155 AT3G11400 459 / 9e-165 eukaryotic translation initiation factor 3G1 (.1.2) Lus10028823 [exp] 435 / 2e-155 AT3G11400 459 / 9e-165 eukaryotic translation initiation factor 3G1 (.1.2) Lus10017459 [exp] 421 / 7e-150 AT3G11400 447 / 3e-160 eukaryotic translation initiation factor 3G1 (.1.2) Lus10012833 [exp] 320 / 3e-110 AT3G11400 345 / 3e-120 eukaryotic translation initiation factor 3G1 (.1.2) Lus10027641 [exp] 62 / 1e-10 AT1G17370 569 / 0.0 oligouridylate binding protein 1B (.1.2) Lus10011924 [exp] 62 / 1e-10 AT1G17370 578 / 0.0 oligouridylate binding protein 1B (.1.2) Lus10014565 [exp] 57 / 8e-10 AT1G13690 277 / 9e-97 ATPase E1 (.1) Lus10004641 [exp] 57 / 8e-10 AT1G13690 277 / 8e-97 ATPase E1 (.1) Lus10023758 [exp] 57 / 1e-09 AT2G37510 164 / 9e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10008130 [exp] 59 / 2e-09 AT1G17370 664 / 0.0 oligouridylate binding protein 1B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0511 [poplar] [flax] Retroviral_zf PF12353 [poplar] [flax] eIF3g Eukaryotic translation initiation factor 3 subunit G
Representative CDS sequence Show only first row Show all	>Potri.008G060000.1 pacid=42807408 polypeptide=Potri.008G060000.1.p locus=Potri.008G060000 ID=Potri.008G060000.1.v4.1 annot-version=v4.1 ATGTCTGTAGACATATCAGCGAAACCAAGCAAGCTGCGTTGGGGTGAGCTAGACGAGGACGATGGTGAAGATCTAGACTTTCTGTTACCTCCCAAACAGG TGATTGGGCCCGATGATAACGGGATCAAAAAAGTGATCGAGTACAAATTTAACGATGATGGTAACAAGATTAAGATTACGACTACGACCCGAGTCCGCAA ACTCGCTAAGGCTCGGTTGAGCAAGCGGGCCGTGGAGAGGCGAAACTGGCCGAAGTTTGGAGATGCAGTTCACGAGGATGTTGGGAGCAGGCTTACTATG GTTTCTACTGAAGAGATCTTGCTTGAAAGACCTAGAGCCCCTGGTACGAAAGCAGACGAAGCCAAGATGGCTGGAGATAACTTGGCTCAATTAGGTAAAG GTGGGGCTGTTCTCATGGTTTGCAGAACTTGTGGTAAGAAGGGTGATCACTGGACATCACGGTGCCCATACAAGGATCTTGCTCAACCGCCTGAAACCTT CATCGATAAACCTGCTGCAACAGAGACAGCTATGGCTGCCTCTGGAGCCACCAAGGGTGCTTATGTCCCACCAAGCATGAGGGCTGGTGCAGAGAGAACT ACAGGATCGGACATGAGGCGCAGGAATGAAGAAAACTCAGTCAGGGTTACCAATTTATCAGAGGACACCAGAGAACCTGACTTGCTTGAACTTTTCCGCA CATTTGGTCATGTGAGTCGTGTTTATGTTGCTATTGATCAGAAGACTGGTGTCAGCAGGGGCTTTGGTTTTGTGAACTTTGTAAGCAAGGAAGATGCTGA GAGGGCAATAAACAAGCTCAATGGATATGGTTATGACAATCTAATCCTTCGAGTCGAATGGGCCACACCAAGATCAAACTAG
AA sequence Show only first row Show all	>Potri.008G060000.1 pacid=42807408 polypeptide=Potri.008G060000.1.p locus=Potri.008G060000 ID=Potri.008G060000.1.v4.1 annot-version=v4.1 MSVDISAKPSKLRWGELDEDDGEDLDFLLPPKQVIGPDDNGIKKVIEYKFNDDGNKIKITTTTRVRKLAKARLSKRAVERRNWPKFGDAVHEDVGSRLTM VSTEEILLERPRAPGTKADEAKMAGDNLAQLGKGGAVLMVCRTCGKKGDHWTSRCPYKDLAQPPETFIDKPAATETAMAASGATKGAYVPPSMRAGAERT TGSDMRRRNEENSVRVTNLSEDTREPDLLELFRTFGHVSRVYVAIDQKTGVSRGFGFVNFVSKEDAERAINKLNGYGYDNLILRVEWATPRSN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G11400		ATEIF3G1, EIF3G...	eukaryotic translation initiat...		Potri.008G060000 [exp]	0	1	Pt-EIF3.1
AT5G27990			Pre-rRNA-processing protein TS...		Potri.013G035000 [exp]	1.41	0.8606
AT5G59950			RNA-binding (RRM/RBD/RNP motif...		Potri.001G236900 [exp]	2.44	0.8324
AT2G41600			Mitochondrial glycoprotein fam...		Potri.006G046350 [exp]	2.44	0.8125
AT5G51880			2-oxoglutarate (2OG) and Fe(II...		Potri.015G135300 [exp]	5.65	0.8341
AT1G31340		NEDD8, ATRUB1, ...	ARABIDOPSIS THALIANA RELATED T...		Potri.002G062500 [exp]	5.74	0.8024
AT1G44835			YbaK/aminoacyl-tRNA synthetase...		Potri.005G175900 [exp]	8.00	0.7939
AT4G13850		ATGRP2, GR-RBP2	glycine rich protein 2, glycin...		Potri.017G059000 [exp]	10.00	0.8035
AT2G34480			Ribosomal protein L18ae/LX fam...		Potri.004G063300 [exp]	10.00	0.7893	RPL18.6
AT4G17830			Peptidase M20/M25/M40 family p...		Potri.001G143200 [exp]	10.24	0.8116
AT3G46870			Pentatricopeptide repeat (PPR)...		Potri.009G038200 [exp]	11.83	0.8199

Compare expression of checked genes

Potri.008G060000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.