Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-EMB101.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39770 648 / 0 VTC1, SOZ1, GMP1, EMB101, CYT1 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) AT3G55590 604 / 0 Glucose-1-phosphate adenylyltransferase family protein (.1) AT4G30570 493 / 2e-176 Glucose-1-phosphate adenylyltransferase family protein (.1) AT2G04650 191 / 3e-57 ADP-glucose pyrophosphorylase family protein (.1) AT1G74910 191 / 4e-57 ADP-glucose pyrophosphorylase family protein (.1.2.3) AT2G34970 51 / 7e-07 Trimeric LpxA-like enzyme (.1) AT3G02270 48 / 6e-06 Trimeric LpxA-like enzyme (.1) AT5G19485 42 / 0.0005 transferases;nucleotidyltransferases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G198800 [exp] 674 / 0 AT2G39770 685 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.006G090300 [exp] 657 / 0 AT2G39770 669 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.008G006700 [exp] 587 / 0 AT2G39770 619 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.012G075500 [exp] 195 / 1e-58 AT1G74910 717 / 0.0 ADP-glucose pyrophosphorylase family protein (.1.2.3) Potri.015G070500 [exp] 178 / 4e-52 AT1G74910 736 / 0.0 ADP-glucose pyrophosphorylase family protein (.1.2.3) Potri.005G045200 [exp] 59 / 4e-09 AT2G34970 969 / 0.0 Trimeric LpxA-like enzyme (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004699 [exp] 660 / 0 AT2G39770 678 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10040265 [exp] 660 / 0 AT2G39770 678 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10024356 [exp] 639 / 0 AT2G39770 666 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10030156 [exp] 500 / 6e-179 AT2G39770 518 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10001014 [exp] 455 / 1e-161 AT2G39770 476 / 1e-169 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10010879 [exp] 247 / 2e-82 AT2G39770 246 / 1e-82 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10042942 [exp] 178 / 5e-52 AT1G74910 734 / 0.0 ADP-glucose pyrophosphorylase family protein (.1.2.3) Lus10032440 [exp] 177 / 1e-51 AT1G74910 747 / 0.0 ADP-glucose pyrophosphorylase family protein (.1.2.3) Lus10014608 [exp] 171 / 1e-51 AT3G55590 175 / 1e-53 Glucose-1-phosphate adenylyltransferase family protein (.1) Lus10039916 [exp] 117 / 1e-30 AT2G39770 116 / 1e-30 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0536 [poplar] [flax] HEXAPEP PF00132 [poplar] [flax] Hexapep Bacterial transferase hexapeptide (six repeats) CL0110 [poplar] [flax] GT-A PF12804 [poplar] [flax] NTP_transf_3 MobA-like NTP transferase domain
Representative CDS sequence Show only first row Show all	>Potri.008G060100.2 pacid=42807397 polypeptide=Potri.008G060100.2.p locus=Potri.008G060100 ID=Potri.008G060100.2.v4.1 annot-version=v4.1 ATGAAGGCACTGATCCTTGTTGGAGGGTTTGGAACAAGGTTGAGGCCGTTGACTCTCAGTGTTCCTAAACCACTTGTTGAATTTGCTAACAAACCTATGA TCCTGCATCAGATAGAGGCTCTCAAGGCTATTGGAGTGACTGAAGTTGTTTTGGCTATCAACTACCAGCCTGAGGTGATGCTCAACTTCTTGAAGGAATT TGAGACGAAGCTTGAGATTAAGATCACTTGCTCACAAGAGACTGAGCCGCTCGGCACTGCTGGTCCTTTGGCCTTAGCAAGGGACAAACTAATCGATGAT TCTGGCGAGCCGTTTTTTGTTCTCAATAGTGATGTTATCAGCGAATACCCACTCAAACAAATGATAGATTTCCACAAAGCCCATGGTGGAGAGGCTTCCA TAATGGTGACCAAGGTGGATGAGCCATCAAAGTATGGTGTTGTGGTTATGGAAGAATCCACAGGAAAAGTTGAAAGATTCGTGGAAAAACCAAAAATATT TGTTGGTAACAAAATCAATGCTGGGATTTATCTGCTGAACCCATCTGTTATTGATAGAATTGAACTGAGGCCCACCTCAATTGAGAAAGAGGTCTTCCCA AAAATTGCAGCAGATAACAAGCTCTACGCAATGGTGCTTCCAGGGTTTTGGATGGACATTGGACAGCCAAGAGACTATATTGTAGGCCTAAGACTCTATC TAGATTCCCTTAAAAAAAATTCCTCATCTAAGTTGGCCACTGGTCCCCATATTGTGGGAAATGTCTTGGTGGATGAGACCGCCAAGATTGGAGAGGGTTG TTTGATTGGACCTGATGTTGCAATAGGACCAGGATGCATTGTCGAGTCAGGAGTTAGACTCTCTCGTTGCTCTGTGATGCGTGGAGTTTACATCAAGAAG CACGCTTGCATATCTAGCAGTATCATCGGGTGGCACTCCACTGTCGGGAGATGGGCCCGTGTAGAGAACATGACAATCCTTGGAGAAGATGTCCAAGTGT GTGACGAAATTTACAGCAATGGAGGTGTGGTTTTACCCCACAAAGAGATCAAATCGAGCATCTTGAAGCCAGAGATTGTAATGTGA
AA sequence Show only first row Show all	>Potri.008G060100.2 pacid=42807397 polypeptide=Potri.008G060100.2.p locus=Potri.008G060100 ID=Potri.008G060100.2.v4.1 annot-version=v4.1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAIGVTEVVLAINYQPEVMLNFLKEFETKLEIKITCSQETEPLGTAGPLALARDKLIDD SGEPFFVLNSDVISEYPLKQMIDFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVERFVEKPKIFVGNKINAGIYLLNPSVIDRIELRPTSIEKEVFP KIAADNKLYAMVLPGFWMDIGQPRDYIVGLRLYLDSLKKNSSSKLATGPHIVGNVLVDETAKIGEGCLIGPDVAIGPGCIVESGVRLSRCSVMRGVYIKK HACISSSIIGWHSTVGRWARVENMTILGEDVQVCDEIYSNGGVVLPHKEIKSSILKPEIVM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Potri.008G060100 [exp]	0	1	Pt-EMB101.2
AT1G80160		GLYI7	glyoxylase I 7, Lactoylglutath...		Potri.003G009000 [exp]	2.00	0.8632
AT4G19180			GDA1/CD39 nucleoside phosphata...		Potri.015G079900 [exp]	2.23	0.8479
AT1G55210			Disease resistance-responsive ...		Potri.003G216200 [exp]	3.74	0.8448
AT2G47480			Protein of unknown function (D...		Potri.013G010600 [exp]	4.89	0.8620
AT4G18780		LEW2, IRX1, ATC...	LEAF WILTING 2, IRREGULAR XYLE...		Potri.011G069600 [exp]	6.00	0.8691
AT2G46170			Reticulon family protein (.1.2...		Potri.014G091200 [exp]	8.00	0.8348
AT1G74520		ATHVA22A	HVA22 homologue A (.1)		Potri.012G069300 [exp]	8.48	0.8176	ATHVA22.1
AT1G28960		ATNUDX15, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.004G053200 [exp]	15.58	0.8336
AT5G12250		TUB6	beta-6 tubulin (.1)		Potri.016G033200 [exp]	16.79	0.8477
AT1G35780			unknown protein		Potri.002G095300 [exp]	18.49	0.7943

Compare expression of checked genes

Potri.008G060100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.