Plant FIBer expression Database

Potri.008G060200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G39800 1008 / 0 ATP5CS, P5CS1 delta1-pyrroline-5-carboxylate synthase 1 (.1.2.3.4)
AT3G55610 1004 / 0 P5CS2 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G198400
[exp]
1180 / 0 AT2G39800 1054 / 0.0 delta1-pyrroline-5-carboxylate synthase 1 (.1.2.3.4)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030158
[exp]
1045 / 0 AT3G55610 1089 / 0.0 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2)
Lus10001018
[exp]
535 / 0 AT3G55610 556 / 0.0 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2)
Lus10004697
[exp]
484 / 6e-168 AT3G55610 515 / 4e-180 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2)
Lus10001019
[exp]
486 / 2e-167 AT3G55610 519 / 0.0 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2)
Lus10001016
[exp]
478 / 2e-165 AT3G55610 497 / 7e-173 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2)
Lus10004696
[exp]
472 / 8e-161 AT3G55610 492 / 3e-170 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2)
Lus10040262
[exp]
457 / 1e-155 AT3G55610 480 / 3e-166 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2)
Lus10040264
[exp]
454 / 6e-153 AT3G55610 486 / 1e-165 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2)
Lus10040263
[exp]
449 / 4e-150 AT3G55610 481 / 1e-162 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2)
Lus10005468
[exp]
142 / 3e-38 AT3G55610 170 / 2e-49 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00696 AA_kinase Amino acid kinase family
Representative CDS sequence
>Potri.008G060200.3 pacid=42807256 polypeptide=Potri.008G060200.3.p locus=Potri.008G060200 ID=Potri.008G060200.3.v4.1 annot-version=v4.1
ATGATTAGTGATTGTTGTTTCCATTTTTTTATCAAAAGGTTTGCGTTATTTGCTTATTTTGAGATTTGGTTGCTGAAGGTTGGGACCGCTGTTGTAACTC
GAGCGGATGGAAGATTAGCCCTTGGAAGATTAGGGGCACTTTGCGAGCAGATTAAAGATTTGAGTTCTCTCGGATACGAAGTTATCGTGGTGACATCGGG
TGCTGTTGGACTTGGTCGCCAAAGGCTTAAATATCGAAGATTCGTCAACAGCAGTTTCTCTGATCTCCAAAAACCACAAGTCGATCTTGATGGGAAGGCC
TGTGCAGCTGTTGGACAAAACAGTCTCATGGCTCTATATGATACAATGTTTAGTCAGCTGGATGTAACATCAGCACAGCTTCTTGTGACAGATAGGGATT
TCAAGAATAAAGATTTTAGAAAGCAACTGGATGAGACAGTGCAATCACTGTTAGCTCTGAGGGTTATCCCTATATTTAATGAGAATGATGCAGTCAGTAC
TAGGAAAGCTCCATATGAGGATTCTTCTGGAATATTTTGGGATAATGACAGTTTAGCAGCTTTGCTGGCTCTGGAGTTAAAAGCTGATCTTCTTGTTCTG
CTGAGTGACGTAGAAGGTCTTTACAGTGGCCCTCCAAGTGACCCGCGTTCAAAGCTGATTCACACATACATTAAGGAAATACATCAGAGTGAAATTACTT
TTGGAGACAAGTCTAGGGTGGGTCGAGGGGGCATGACAGCCAAAGTAAAAGCTGCTGTCAATGCAGCTTATGCTGGCATCCCTGTTGTTATAACCAGTGG
GTATGCACCTGAAAACATAATTAAAGTCCTTCAAGGAGAGCGTGTTGGCACCCTCTTTCATCAAGATGCACATTTGTGGGCCCTAGATAAAGAAGTTGGT
GGACGTGAGATGGCAGTTGCAGCAAGGGAAAGTTCCAGAAGGCTCCAGGCCTTGTCTTCACAAGATAGGAACAAGATTTTGCTGGACGTAGCTGATGCGC
TAGAAGCCAATGAAAAACTGATCAATATTGAAAATGAATCTGATGTTGTTGCTGCACAAGAGGCTGGATTGGAGAAATCCTTGATATCTCGGCTGGCTTT
AAAGCCTGGGAAGATTAAGAGTCTTGCGAACACTATTCGTGTGCTTGCTAACATGGACGACCCAATTGGTTGTATTTTGAAGAGAAATGAGCTGGCAGAT
GGACTCGTCCTGGAGAAAACCTCATCTCCTTTAGGTGTTCTCCTGATTATTTTCGAGTCTCGACCAGATGCTCTAGTGCAGATAGCTTCATTGGCAATCC
GAAGTGGGAATGGACTCCTCTTGAAAGGAGGAAAGGAGGCCAAGAGGTCAAATGCAATTTTGCACAAGGTAATCACTACAGCCATCCCAGACACTGTTGG
TGGAAAACTTATTGGGCTAGTGACTTCAATTGATGAAATTCCTGATCTGCTTAAGCTTGATGATGTTATCGATCTTGTGATCCCAAGAGGCAGCAGTAAA
CTTGTTTCTAAAATAAAGTCATCCACTAAAATTCCTGTTCTTGGTCATGCTGATGGCATTTGTCATGTCTATGTCGATAAGTCTGCTAACATTGAAATGG
CAAAGCGTGTTGTCTTGGATGCCAAAGTAGATTATCCAGCAGCTTGCAACGCAATGGAAACACTTCTTGTGCATCAGGATTTGGTGCATAGTGGTGGGCT
CAATGAGCTTATTGCTGATCTTCGCACTGAAGGCGTTACTTTATTTGGTGGACAAAGGGCATGCAAGGAATTGAACATTCCAGAGGCCCATACTTTCCAT
CACGAGTACAATTCTATGGCCTGCACTGTTGAAATTGTTGATGATGAGCATGCCGCCATTGATCATATCCATCAACATGGAAGTGCACATACTGATTGTA
TAGTAGCAGAAGACCATGATGTTGCTGAAGTCTTTCTACGTCAAGTTGACAGTGCTGCTGTTTTTCATAATGCAAGCACAAGATTCTGCGATGGGGCTCG
ATTTGGATTAGGTGCAGAGGTCGGAATAAGCACAAGCAGGATTCATGCTCGAGGCCCTGTAGGGGTTGAGGGATTGTTAACTACTAGATGGATTCTCAGA
GGTTGTGGACAAGTGGTGAATGCTGATCAAGGGGTGATTTACACCCATAAGGATATAACAATGTAA
AA sequence
>Potri.008G060200.3 pacid=42807256 polypeptide=Potri.008G060200.3.p locus=Potri.008G060200 ID=Potri.008G060200.3.v4.1 annot-version=v4.1
MISDCCFHFFIKRFALFAYFEIWLLKVGTAVVTRADGRLALGRLGALCEQIKDLSSLGYEVIVVTSGAVGLGRQRLKYRRFVNSSFSDLQKPQVDLDGKA
CAAVGQNSLMALYDTMFSQLDVTSAQLLVTDRDFKNKDFRKQLDETVQSLLALRVIPIFNENDAVSTRKAPYEDSSGIFWDNDSLAALLALELKADLLVL
LSDVEGLYSGPPSDPRSKLIHTYIKEIHQSEITFGDKSRVGRGGMTAKVKAAVNAAYAGIPVVITSGYAPENIIKVLQGERVGTLFHQDAHLWALDKEVG
GREMAVAARESSRRLQALSSQDRNKILLDVADALEANEKLINIENESDVVAAQEAGLEKSLISRLALKPGKIKSLANTIRVLANMDDPIGCILKRNELAD
GLVLEKTSSPLGVLLIIFESRPDALVQIASLAIRSGNGLLLKGGKEAKRSNAILHKVITTAIPDTVGGKLIGLVTSIDEIPDLLKLDDVIDLVIPRGSSK
LVSKIKSSTKIPVLGHADGICHVYVDKSANIEMAKRVVLDAKVDYPAACNAMETLLVHQDLVHSGGLNELIADLRTEGVTLFGGQRACKELNIPEAHTFH
HEYNSMACTVEIVDDEHAAIDHIHQHGSAHTDCIVAEDHDVAEVFLRQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILR
GCGQVVNADQGVIYTHKDITM

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G39800 ATP5CS, P5CS1 delta1-pyrroline-5-carboxylate... Potri.008G060200
[exp]
0 1
AT5G40780 LHT1, LTH1 lysine histidine transporter 1... Potri.010G055800
[exp]
3.46 0.8582
AT1G58110 bZIP Basic-leucine zipper (bZIP) tr... Potri.015G147800
[exp]
10.81 0.8312
AT4G33590 unknown protein Potri.007G112500
[exp]
16.58 0.7701
AT3G23250 MYB ATMYB15, ATY19 myb domain protein 15 (.1.2) Potri.011G040200
[exp]
19.59 0.7625
Potri.008G069350
[exp]
30.39 0.7351
AT4G21200 ATGA2OX8 ARABIDOPSIS THALIANA GIBBERELL... Potri.011G134100
[exp]
30.49 0.7967
AT2G33690 Late embryogenesis abundant pr... Potri.005G145200
[exp]
31.17 0.8094
Potri.001G298350
[exp]
34.49 0.8045
Potri.006G119250
[exp]
47.52 0.7971
Potri.001G448600
[exp]
55.85 0.7346

Potri.008G060200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.