Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39805 335 / 1e-116 Integral membrane Yip1 family protein (.1.2) AT5G27490 174 / 4e-53 Integral membrane Yip1 family protein (.1) AT3G05280 169 / 4e-51 Integral membrane Yip1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G198300 [exp] 466 / 4e-168 AT2G39805 321 / 9e-111 Integral membrane Yip1 family protein (.1.2) Potri.005G033900 [exp] 171 / 6e-52 AT5G27490 468 / 2e-168 Integral membrane Yip1 family protein (.1) Potri.013G023400 [exp] 154 / 2e-45 AT5G27490 423 / 6e-151 Integral membrane Yip1 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001020 [exp] 337 / 2e-116 AT2G39805 322 / 1e-110 Integral membrane Yip1 family protein (.1.2) Lus10004695 [exp] 325 / 8e-113 AT2G39805 324 / 2e-112 Integral membrane Yip1 family protein (.1.2) Lus10030159 [exp] 273 / 1e-91 AT2G39805 256 / 6e-85 Integral membrane Yip1 family protein (.1.2) Lus10004473 [exp] 173 / 8e-53 AT5G27490 474 / 4e-171 Integral membrane Yip1 family protein (.1) Lus10029935 [exp] 172 / 3e-52 AT5G27490 473 / 8e-171 Integral membrane Yip1 family protein (.1) Lus10015189 [exp] 161 / 5e-48 AT5G27490 464 / 4e-167 Integral membrane Yip1 family protein (.1) Lus10031511 [exp] 160 / 1e-47 AT5G27490 462 / 3e-166 Integral membrane Yip1 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0112 [poplar] [flax] Yip1 PF04893 [poplar] [flax] Yip1 Yip1 domain
Representative CDS sequence Show only first row Show all	>Potri.008G060300.7 pacid=42807102 polypeptide=Potri.008G060300.7.p locus=Potri.008G060300 ID=Potri.008G060300.7.v4.1 annot-version=v4.1 ATGGACGAATCTTACGGAAATCTCCCTTCTAGCCATTTGCTCGGTTCAGTACCTGCCGTGGTCACTGAAGAAAAAGCAAAAACTATCGTGAATTATGAAG TTCCTGAAGCAAGTATGCAAACCTTCCCTCCAAACATTAATGGAGGCAGTGGCCGCGGTTATCAAACTCTTGGAAGTCCACCCGAGGGATTTGAGCAACA ACCACCAAACAATTGGAAGGGGGTATTTAGTATCTCATCATACATGCAATATTTCAACGTGGATACAGATATTGTTGTCAACAGATTGATGAGCTCTTTT TATCCTATTGGTGGTGATTTTTTCAGCAAGATTGATGCAAACCCTGATCTATACGGACTTGTCTGGGTCGCAACTACATTGATATTTGTGCTTGCTTCTC TTGGAAACCTTGCCACCTACCTCATACAGAAACGTACTGATCACAAATCTTCTTGGAGCTTTGATGTTGGATATGTGAATGTGGCAGTGTTTTCAGTCTA CGGCTATGCAATTGTGGTGCCGTTGGCATTTTATTTCTTGTTTCGTTATCTGGAATCAAATCCTAAGCTGATACAGTTTTGGTGCATGTGGGGATATTCT CTTTTCATCTTTGTTCCAAGCTCGTTTTTGTTGGTTGTCCCAGTTGAGGCTTTTCGTTGGATCATTATACTTGTTGCTGGTGTTGACTCGGGCATGTTTG TTGCTTCAAATCTCAAGACCCTTGTTGAGGGGAATGATCTTGCAATTATAGTGGTTGCAGCGTTCTTCTTGCAACTGGCTCTAGCAATCTTCTTTAAGGT TTGGTTCTTCCAATAA
AA sequence Show only first row Show all	>Potri.008G060300.7 pacid=42807102 polypeptide=Potri.008G060300.7.p locus=Potri.008G060300 ID=Potri.008G060300.7.v4.1 annot-version=v4.1 MDESYGNLPSSHLLGSVPAVVTEEKAKTIVNYEVPEASMQTFPPNINGGSGRGYQTLGSPPEGFEQQPPNNWKGVFSISSYMQYFNVDTDIVVNRLMSSF YPIGGDFFSKIDANPDLYGLVWVATTLIFVLASLGNLATYLIQKRTDHKSSWSFDVGYVNVAVFSVYGYAIVVPLAFYFLFRYLESNPKLIQFWCMWGYS LFIFVPSSFLLVVPVEAFRWIIILVAGVDSGMFVASNLKTLVEGNDLAIIVVAAFFLQLALAIFFKVWFFQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39805			Integral membrane Yip1 family ...		Potri.008G060300 [exp]	0	1
AT5G12240			unknown protein		Potri.009G069000 [exp]	1.41	0.9053
					Potri.003G018400 [exp]	2.00	0.9037
AT4G38250			Transmembrane amino acid trans...		Potri.009G167900 [exp]	2.23	0.8692	PtrANT3
AT4G26980			RNI-like superfamily protein (...		Potri.011G090700 [exp]	3.00	0.9003
AT5G61030		GR-RBP3	glycine-rich RNA-binding prote...		Potri.012G061600 [exp]	6.00	0.8911
AT1G52740		HTA9	histone H2A protein 9 (.1)		Potri.006G249300 [exp]	6.63	0.8264	HTA907
AT5G08170		ATAIH, EMB1873	EMBRYO DEFECTIVE 1873, AGMATIN...		Potri.015G055300 [exp]	6.70	0.8509
AT1G65650		UCH2	Peptidase C12, ubiquitin carbo...		Potri.004G130400 [exp]	8.12	0.8681
					Potri.010G150601 [exp]	8.48	0.8565
AT5G10810		ATER	ARABIDOPSIS THALIANA ENHANCER ...		Potri.018G017300 [exp]	9.53	0.8667

Compare expression of checked genes

Potri.008G060300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.