Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11397 266 / 4e-91 PRA1.A3 prenylated RAB acceptor 1.A3 (.1) AT5G05987 266 / 4e-91 PRA1.A2 prenylated RAB acceptor 1.A2 (.1) AT5G02040 255 / 6e-87 PRA1.A1 prenylated RAB acceptor 1.A1 (.1.2) AT3G11402 266 / 9e-84 Cysteine/Histidine-rich C1 domain family protein (.1.2) AT5G01640 41 / 0.0003 PRA1.B5 prenylated RAB acceptor 1.B5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G198000 [exp] 328 / 7e-116 AT5G05987 253 / 3e-86 prenylated RAB acceptor 1.A2 (.1) Potri.006G091300 [exp] 279 / 3e-96 AT5G02040 320 / 1e-112 prenylated RAB acceptor 1.A1 (.1.2) Potri.005G219100 [exp] 41 / 0.0003 AT1G55190 132 / 8e-39 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030160 [exp] 299 / 3e-104 AT5G05987 308 / 1e-107 prenylated RAB acceptor 1.A2 (.1) Lus10001021 [exp] 291 / 7e-101 AT5G05987 301 / 1e-104 prenylated RAB acceptor 1.A2 (.1) Lus10022592 [exp] 271 / 2e-93 AT5G02040 298 / 9e-104 prenylated RAB acceptor 1.A1 (.1.2) Lus10021492 [exp] 271 / 3e-93 AT5G02040 297 / 1e-103 prenylated RAB acceptor 1.A1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03208 [poplar] [flax] PRA1 PRA1 family protein
Representative CDS sequence Show only first row Show all	>Potri.008G060400.1 pacid=42806651 polypeptide=Potri.008G060400.1.p locus=Potri.008G060400 ID=Potri.008G060400.1.v4.1 annot-version=v4.1 ATGGATTGGGGAAACGTAACAGCAGAAGATCTAATCGGTGCATTAAAGGAAGTAGATTGGACATCTCCGCCTCGTCCTCTTAATGAATTCTTCTCCAGAT TCACCATTCCTCGTTCTTACTCGAAGTGGAGTAGCCGCCTCAAATGCAATTCCTACTACTATCGGACAAATTACTTCATTTTGATACTGCTTATTCTTGG TGTTGCATGTATCTTAAGGCCACTGGCTATTCTAGCCACTGCGTTGTCGGCTCTAAGCATCGCTTTCCTTAATGATAGTTTTGCAGCTACTTTCAGTGAG AGAGTAACAAGAACTGTAAGGAAGTTCTCTCCACATTTGGCAGCAAAAATGAGGCCTCGGCATATGCCTGTTATCCGTGGTCGTCCATCAGCAAAAAAGT CTGTGTACATTCTTGGCCAACCTCGTTTATTGTTTGTCCTTTTATTCTCAGCTGTCAGTTTTGTTTTGTGGTATGCTTCTGGCAGTCTTTTGTATATTTC ATGGGCGCTCATAAGTGGCCTTCTTGTCATTGTGCTCCATGCAAGCTTCAAAACACCTAATCTGAAAGCACGCCTCAACACATTCCGTGAAGAATTTCGT GCAGTCTGGCGTAATTATAGTGATCTCTAA
AA sequence Show only first row Show all	>Potri.008G060400.1 pacid=42806651 polypeptide=Potri.008G060400.1.p locus=Potri.008G060400 ID=Potri.008G060400.1.v4.1 annot-version=v4.1 MDWGNVTAEDLIGALKEVDWTSPPRPLNEFFSRFTIPRSYSKWSSRLKCNSYYYRTNYFILILLILGVACILRPLAILATALSALSIAFLNDSFAATFSE RVTRTVRKFSPHLAAKMRPRHMPVIRGRPSAKKSVYILGQPRLLFVLLFSAVSFVLWYASGSLLYISWALISGLLVIVLHASFKTPNLKARLNTFREEFR AVWRNYSDL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G11397		PRA1.A3	prenylated RAB acceptor 1.A3 (...		Potri.008G060400 [exp]	0	1
AT5G64560		MRS2-2, ATMGT9	magnesium transporter 9 (.1.2)		Potri.008G161400 [exp]	2.82	0.7253
AT4G11740		SAY1	Ubiquitin-like superfamily pro...		Potri.003G122300 [exp]	3.31	0.7542
AT1G60900			U2 snRNP auxilliary factor, la...		Potri.011G050400 [exp]	3.74	0.6938
AT5G01960			RING/U-box superfamily protein...		Potri.016G141200 [exp]	4.24	0.6992
AT5G64500			Major facilitator superfamily ...		Potri.001G286600 [exp]	4.89	0.7019
AT4G35300		TMT2	tonoplast monosaccharide trans...		Potri.004G207100 [exp]	6.63	0.7469
AT2G36310		NSH1, URH1	nucleoside hydrolase 1, uridin...		Potri.006G083400 [exp]	9.21	0.7173
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Potri.015G110300 [exp]	13.92	0.5760
AT3G58530			RNI-like superfamily protein (...		Potri.006G195800 [exp]	14.42	0.6096
AT4G17670			Protein of unknown function (D...		Potri.001G148700 [exp]	17.83	0.7071

Compare expression of checked genes

Potri.008G060400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.