Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38040 165 / 3e-47 Exostosin family protein (.1) AT4G16745 130 / 2e-33 Exostosin family protein (.1.2) AT3G07620 122 / 7e-31 Exostosin family protein (.1) AT5G11130 121 / 8e-31 Exostosin family protein (.1) AT5G03795 118 / 1e-29 Exostosin family protein (.1) AT5G20260 113 / 9e-28 Exostosin family protein (.1) AT5G25310 108 / 3e-26 Exostosin family protein (.1) AT3G42180 108 / 3e-26 Exostosin family protein (.1.3) AT4G32790 108 / 8e-26 Exostosin family protein (.1) AT5G33290 106 / 3e-25 XGD1 xylogalacturonan deficient 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G197900 [exp] 559 / 0 AT4G38040 159 / 3e-45 Exostosin family protein (.1) Potri.005G147500 [exp] 181 / 4e-53 AT4G38040 653 / 0.0 Exostosin family protein (.1) Potri.007G058400 [exp] 178 / 3e-52 AT4G38040 649 / 0.0 Exostosin family protein (.1) Potri.007G117800 [exp] 174 / 6e-51 AT4G38040 385 / 4e-132 Exostosin family protein (.1) Potri.015G087900 [exp] 162 / 4e-46 AT4G38040 352 / 8e-119 Exostosin family protein (.1) Potri.007G117600 [exp] 159 / 3e-45 AT4G38040 341 / 5e-115 Exostosin family protein (.1) Potri.007G116800 [exp] 157 / 3e-44 AT4G38040 333 / 4e-111 Exostosin family protein (.1) Potri.019G036500 [exp] 153 / 2e-42 AT4G38040 275 / 9e-88 Exostosin family protein (.1) Potri.001G072500 [exp] 142 / 2e-38 AT4G38040 232 / 2e-71 Exostosin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012723 [exp] 180 / 5e-53 AT4G38040 674 / 0.0 Exostosin family protein (.1) Lus10002664 [exp] 179 / 1e-52 AT4G38040 677 / 0.0 Exostosin family protein (.1) Lus10039142 [exp] 130 / 1e-33 AT5G03795 603 / 0.0 Exostosin family protein (.1) Lus10013790 [exp] 128 / 7e-33 AT5G03795 602 / 0.0 Exostosin family protein (.1) Lus10027707 [exp] 124 / 2e-31 AT5G20260 526 / 0.0 Exostosin family protein (.1) Lus10008751 [exp] 118 / 2e-29 AT3G07620 542 / 0.0 Exostosin family protein (.1) Lus10016058 [exp] 113 / 2e-28 AT5G03795 439 / 1e-152 Exostosin family protein (.1) Lus10005186 [exp] 113 / 1e-27 AT5G20260 513 / 3e-180 Exostosin family protein (.1) Lus10001917 [exp] 111 / 6e-27 AT5G25310 499 / 3e-174 Exostosin family protein (.1) Lus10039980 [exp] 110 / 2e-26 AT5G20260 489 / 2e-169 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [poplar] [flax] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Potri.008G060500.1 pacid=42806902 polypeptide=Potri.008G060500.1.p locus=Potri.008G060500 ID=Potri.008G060500.1.v4.1 annot-version=v4.1 ATGTCAACTATTATTTACTTTCTCTGTCTTTCTCTCTTAACTTCAGTTTCCAAATCCATCAATGATTCCACCTCACTGTATCTCTCACCCACCATATTCT TCCCCAATTACCAAAACATGCTAAACTCTTTCAAAATTTACATTTACACCCCTTCGAAGCCCTTTTCCTTCTCTTCTCCCACTGAGTCTCTTTTCTTCAC TTCTCTCCAAGCCAGTCCCTTTGTAACCCAAAACCCAGAAGAAGCTCACCTATTCTTTGTTCCGTTCGCCTCCAATCTCTCCACGCGCTCAATCGCGCGT TTTATTAGAGACCTCAGAATGGAGTTCCCGTACTGGAACCGCACTCTCGGCGCCGATCATTTTTATGTATCCTGTGCTGGTCTGGGTTACGAGTCTGACC GAAATCTCGTGGAACTGAAGAAAAACTCGGTACAGATCTCTTGCTTCCCGGTACCAGAGGGTAAGTTTGTGCCTCACAAGGATATTTCCTTGCCTCCACT CGCGAGGATCACACGCGCATCACACGCTCCGGGGAACAGGACAGTGAGGTATCTAGTAAGACACGGTGGGGTCAAAGATTCAAAATTGGCCAACGAATTG AGAAATGATTCTGATTTTCTGATGGAATCCGAACCGTCCAATGAAATGACTTTAGTCGAGAGACTAGGGAGCAGCATGTTTTGTTTGTTCGAGGATGGGG CTGATATTTCTGGAATAGGTGAAGCATTGCGTTTTGGGTGTGTGCCTGTAATGGTAACTGACCGTCCGATGCAGGACTTGCCGTTGATGGATGTGCTCAG TTGGCAGAAGATTGCTGTTTTTGTGGGGTCCGGTGGTGGGATTAAGGAAATGAAACGAGTGTTGGATCGGACGTGTAAAGATGATGAGTGCGAGGGAACG AGGAGATTGGGTGTGGCGGCTAGCCAGCATTTTGGGTGGAATGAAATCCCGCAGCCGTACGATTCGTTTTATATGGTGGTTTACCAGCTTTGGCTTAGGC GGCACACAATTAGATACCCCCGGAGAGAATTTGTGTAG
AA sequence Show only first row Show all	>Potri.008G060500.1 pacid=42806902 polypeptide=Potri.008G060500.1.p locus=Potri.008G060500 ID=Potri.008G060500.1.v4.1 annot-version=v4.1 MSTIIYFLCLSLLTSVSKSINDSTSLYLSPTIFFPNYQNMLNSFKIYIYTPSKPFSFSSPTESLFFTSLQASPFVTQNPEEAHLFFVPFASNLSTRSIAR FIRDLRMEFPYWNRTLGADHFYVSCAGLGYESDRNLVELKKNSVQISCFPVPEGKFVPHKDISLPPLARITRASHAPGNRTVRYLVRHGGVKDSKLANEL RNDSDFLMESEPSNEMTLVERLGSSMFCLFEDGADISGIGEALRFGCVPVMVTDRPMQDLPLMDVLSWQKIAVFVGSGGGIKEMKRVLDRTCKDDECEGT RRLGVAASQHFGWNEIPQPYDSFYMVVYQLWLRRHTIRYPRREFV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38040			Exostosin family protein (.1)		Potri.008G060500 [exp]	0	1
AT1G04200			unknown protein		Potri.010G081800 [exp]	2.23	0.7811
					Potri.010G148450 [exp]	2.82	0.7790
AT4G39140			RING/U-box superfamily protein...		Potri.004G158400 [exp]	3.74	0.7143
AT4G38040			Exostosin family protein (.1)		Potri.007G117600 [exp]	6.70	0.7491
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Potri.013G031700 [exp]	7.34	0.6751	Pt-NHX2.2
AT5G04390	C2H2ZnF		C2H2-type zinc finger family p...		Potri.010G229400 [exp]	7.74	0.6929
AT2G27260			Late embryogenesis abundant (L...		Potri.009G019800 [exp]	8.48	0.7175
AT5G57870		eIFiso4G1	eukaryotic translation Initiat...		Potri.018G104100 [exp]	10.58	0.6827
					Potri.014G175100 [exp]	13.96	0.7253
AT4G36750			Quinone reductase family prote...		Potri.005G126200 [exp]	15.74	0.7080

Compare expression of checked genes

Potri.008G060500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.