Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05980 724 / 0 ATDFB, FPGS1 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2) AT3G55630 610 / 0 ATDFD, FPGS3 folylpolyglutamate synthetase 3, DHFS-FPGS homolog D (.1.2.3) AT3G10160 586 / 0 ATDFC, FPGS2 folylpolyglutamate synthetase 2, A. THALIANA DHFS-FPGS HOMOLOG C, DHFS-FPGS homolog C (.1) AT5G41480 132 / 4e-33 EMB9, ATDFA, GLA1 GLOBULAR ARREST1, EMBRYO DEFECTIVE 9, A. THALIANA DHFS-FPGS HOMOLOG A, Folylpolyglutamate synthetase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G197800 [exp] 1006 / 0 AT5G05980 686 / 0.0 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2) Potri.006G045400 [exp] 580 / 0 AT3G10160 705 / 0.0 folylpolyglutamate synthetase 2, A. THALIANA DHFS-FPGS HOMOLOG C, DHFS-FPGS homolog C (.1) Potri.016G041800 [exp] 578 / 0 AT3G10160 708 / 0.0 folylpolyglutamate synthetase 2, A. THALIANA DHFS-FPGS HOMOLOG C, DHFS-FPGS homolog C (.1) Potri.015G022400 [exp] 125 / 2e-30 AT5G41480 570 / 0.0 GLOBULAR ARREST1, EMBRYO DEFECTIVE 9, A. THALIANA DHFS-FPGS HOMOLOG A, Folylpolyglutamate synthetase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040261 [exp] 781 / 0 AT5G05980 723 / 0.0 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2) Lus10004694 [exp] 746 / 0 AT5G05980 694 / 0.0 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2) Lus10030161 [exp] 744 / 0 AT5G05980 696 / 0.0 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2) Lus10001023 [exp] 659 / 0 AT5G05980 599 / 0.0 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2) Lus10038824 [exp] 132 / 9e-33 AT5G41480 553 / 0.0 GLOBULAR ARREST1, EMBRYO DEFECTIVE 9, A. THALIANA DHFS-FPGS HOMOLOG A, Folylpolyglutamate synthetase family protein (.1) Lus10014939 [exp] 126 / 9e-31 AT5G41480 558 / 0.0 GLOBULAR ARREST1, EMBRYO DEFECTIVE 9, A. THALIANA DHFS-FPGS HOMOLOG A, Folylpolyglutamate synthetase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G060600.5 pacid=42807531 polypeptide=Potri.008G060600.5.p locus=Potri.008G060600 ID=Potri.008G060600.5.v4.1 annot-version=v4.1 ATGGCAGAAGGTGACAACAATGGATCGTCTAAACCAACGGTGACTCCGTACGAGGAAGCCCTGGATGCTTTATCCTCTTTGATAACGAAACGCAGTCGTG CTGATAAGAGCAACAACGGAGATCGATTTGATGTGCTTTTCGATTATTTAAAAATTCTGGAGTTAGAGGAGGCAATATCAGAAATGAAGATCATACACGT GGCAGGCACTAAAGGAAAGGGATCTACGTGCACCTTTACGGAATCTATCCTACGTAATTGCGGCTTTCGTACTGGACTTTTCACATCACCTCATCTCATT GATGTCCGAGAAAGATTTCGTCTGGATGGTAAGGACATTTGTGAAGAGAAATTCTTGGCATATTTCTGGTGGTGTTATGATAGACTAAAGGAAAAATCTA CAGAAGATGTACCAATGCCTACCTATTTTCGCTTTCTTGCTTTACTTGCCTTCAAGATATTTTCAGCGGAACAGGTAGATGTAGCTATTTTGGAGGTTGG GTTAGGTGGAAAGTTTGATGCAACAAATGTGGTTCAGAAACCTATTGTCTGTGGTATAGCTTCCCTCGGGTATGATCACATGGAGATTCTTGGAAATACT CTAGCACAAATTGCTGGGGAGAAGGCTGGTATCTTTAAGGATGGAATTCCAGCCTTCACTGTGCCTCAACCTGATGAAGCAATGAATGTTCTTGAAGAGA AGGCTTCTGAGTTAAATGTACACCTTCAAGTGGCGGAGCCATTGGATGCCAAATTGCTGAATGGTTTAAAACTTAGGCTTGAAGGTGAGCACCAGTATTT AAATGCTGGTCTTGCCATTGCATTGTCTTTTACTTGGCTTCAAAGGACTGGGCATCACGAATTTACCCACATGGAGCAGGCTAGCTCACTTCCCGAGCAG TTTATTAAGGGGCTAACAACAGCCAGTTTGCAAGGGAGGGCTCAAATTGTCACTGATCAATACATTAATGCCGAGAGTTATGGAGATCTTGTGTTTTATT TGGATGGAGCCCATAGTCCTGAAAGCATGGAGATGTGTGCAAGATGGTTTTCTCTTGCCATAAAAGAAGACAGCCAGAAAAGAACCTTTAATTATCCCCC ACAGAACAATTCTGAATCCACTATTGAATTGGTACAGGAGCATCATGATGAGAGATATGGAAAGAGTTCCATGCAGATATTGCTGTTCAATTGCATGTCA GTGCGAGATCCTCAGCTGCTTCTTCCTCCTCTCATGAAAGCATGTGCAAGTCATGGTGTCTACTTCAAGAAGGCGCTCTTTGTTGCAAACACATCCGTGT ATTACAAGGTTGGATCTCATGCATTACCACCAACTGATTCTCAAGTTAATTTATCATGGCAGTTTGCTCTTCAAAGAGTATGGGAGAATCTCATACAGAG CGATAAAGGAGGGGAGGTTAAGCATGCGGTTGCTGTTTGTGAAGAAGGTAAAGAGGATGCCAAAATGAGTGGTAGGACTTGTGAAAATAGTGCGGTCTTT CCTTCTCTCCCATTGGCTATTAAATGGCTTAGGGAAAGCGTCCAACGGAATCGATCTGTTCACTACCAGGTCCTTGTAACCGGTTCATTGCATCTTGTGG GTGATGTGTTGAGATTAGTCAAAAAGTGA
AA sequence Show only first row Show all	>Potri.008G060600.5 pacid=42807531 polypeptide=Potri.008G060600.5.p locus=Potri.008G060600 ID=Potri.008G060600.5.v4.1 annot-version=v4.1 MAEGDNNGSSKPTVTPYEEALDALSSLITKRSRADKSNNGDRFDVLFDYLKILELEEAISEMKIIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLI DVRERFRLDGKDICEEKFLAYFWWCYDRLKEKSTEDVPMPTYFRFLALLAFKIFSAEQVDVAILEVGLGGKFDATNVVQKPIVCGIASLGYDHMEILGNT LAQIAGEKAGIFKDGIPAFTVPQPDEAMNVLEEKASELNVHLQVAEPLDAKLLNGLKLRLEGEHQYLNAGLAIALSFTWLQRTGHHEFTHMEQASSLPEQ FIKGLTTASLQGRAQIVTDQYINAESYGDLVFYLDGAHSPESMEMCARWFSLAIKEDSQKRTFNYPPQNNSESTIELVQEHHDERYGKSSMQILLFNCMS VRDPQLLLPPLMKACASHGVYFKKALFVANTSVYYKVGSHALPPTDSQVNLSWQFALQRVWENLIQSDKGGEVKHAVAVCEEGKEDAKMSGRTCENSAVF PSLPLAIKWLRESVQRNRSVHYQVLVTGSLHLVGDVLRLVKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05980		ATDFB, FPGS1	folylpolyglutamate synthetase ...		Potri.008G060600 [exp]	0	1
AT5G23050		AAE17	acyl-activating enzyme 17 (.1)		Potri.015G056000 [exp]	2.44	0.8407
AT5G26667		PYR6	P-loop containing nucleoside t...		Potri.014G104700 [exp]	6.78	0.7738
AT3G02580		BUL1, DWF7, STE...	DWARF 7, BOULE 1, sterol 1 (.1...		Potri.004G097500 [exp]	7.00	0.7687	DWF7.2
AT5G37478			TPX2 (targeting protein for Xk...		Potri.017G144061 [exp]	15.52	0.8424
AT4G31820		MAB4, ENP, NPY1	NAKED PINS IN YUC MUTANTS 1, M...		Potri.018G018600 [exp]	22.36	0.8254
AT5G23720		PHS1	PROPYZAMIDE-HYPERSENSITIVE 1, ...		Potri.015G105000 [exp]	37.10	0.7975	Pt-PHS1.2
AT5G18410		ATSRA1, KLK, PI...	PIROGI 121, PIROGI, KLUNKER, t...		Potri.013G051200 [exp]	42.00	0.7868
AT3G22970			Protein of unknown function (D...		Potri.005G216900 [exp]	46.47	0.8113
AT2G40120			Protein kinase superfamily pro...		Potri.008G069000 [exp]	51.80	0.8013
AT3G14170			Plant protein of unknown funct...		Potri.003G070200 [exp]	53.85	0.8013

Compare expression of checked genes

Potri.008G060600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.