Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05970 862 / 0 NEDD1 NEURAL PRECURSOR CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED GENE 1, Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G43770 60 / 2e-09 Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 57 / 6e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT1G62020 57 / 7e-08 Coatomer, alpha subunit (.1) AT3G49660 55 / 8e-08 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT2G21390 55 / 2e-07 Coatomer, alpha subunit (.1) AT4G02730 54 / 2e-07 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 54 / 6e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT3G42660 53 / 7e-07 transducin family protein / WD-40 repeat family protein (.1) AT5G16750 53 / 8e-07 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G197700 [exp] 1166 / 0 AT5G05970 826 / 0.0 NEURAL PRECURSOR CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED GENE 1, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G051900 [exp] 66 / 4e-11 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 62 / 6e-10 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G065200 [exp] 59 / 1e-08 AT3G42660 1107 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.007G009500 [exp] 58 / 1e-08 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 58 / 2e-08 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 54 / 4e-07 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G074800 [exp] 53 / 8e-07 AT1G62020 2113 / 0.0 Coatomer, alpha subunit (.1) Potri.018G020200 [exp] 53 / 1e-06 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001024 [exp] 950 / 0 AT5G05970 843 / 0.0 NEURAL PRECURSOR CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED GENE 1, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10030162 [exp] 949 / 0 AT5G05970 846 / 0.0 NEURAL PRECURSOR CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED GENE 1, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10040260 [exp] 847 / 0 AT5G05970 766 / 0.0 NEURAL PRECURSOR CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED GENE 1, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10004693 [exp] 795 / 0 AT5G05970 714 / 0.0 NEURAL PRECURSOR CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED GENE 1, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10039636 [exp] 62 / 7e-10 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 61 / 2e-09 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10013452 [exp] 61 / 3e-09 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10006916 [exp] 59 / 4e-09 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 56 / 4e-08 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10016481 [exp] 54 / 4e-07 AT1G62020 2130 / 0.0 Coatomer, alpha subunit (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G060700.2 pacid=42807743 polypeptide=Potri.008G060700.2.p locus=Potri.008G060700 ID=Potri.008G060700.2.v4.1 annot-version=v4.1 ATGCAACGCAATAATAATACCTCTTCTACACTTACATTCAAATTTATTTTTTTAATAACCCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCCTTCCCCTCC TTTCTAAACTTATAGCAAGGATGATGAACTTGGCGGATCCATCAATGGCGTTACTGGCGGCGAGTGGTGGCGACACCGTGAAGCTTTTCGATGTATCAGT GGAACCAGGAGATCCATGTACTTTGAGTTACACACCAACTCCGGGTTGCCTTGTTAACGCAGTCAAGTGGAATCACACTAATTTAGTGGTGGCTAGTGCT GGAGAAGATAAGAAGATTTCATTGTGGAGGAAAAATGGGCAGAGCATGGGCACAATTCCAGTTTCTGGGACAGATAGTGGGGACAGCATTGAGGAATCTA TATTGGCTATTAGCTTTAGTAATAAGGGATCTAGATATATATGCTCTGGAGGAAGTGGTCAAGTTGTAAGAATATGGGATCTGCAGAGGAAGCGCTGCAT TAAATGGTTGAGGGGTCATACCAGTCCAATAACAGGTGCTATGTACAATTGCAAAGATGAGCACCTGGCTTCCATAAGTTTGAGCGGGGACCTTATTCTG CACAACCTTGCATCTGGTGCAAGGGCGACAGAACTCAAGGACCCAAATAAACAGGTACTAAGGGTGCTTGATTATTCACGAGTTAGCCGACACCTTTTGG TGACCGCTGGCGATGATGGTTCTGTGCATTTGTGGGATACAACTGGTCGCAGCCCAAAGGTTTCGTGGTCGAAGCAACATTCTGCACCAACTGCTGGTAT TAGCTTCTCGCCATCAAATGACAAGATAATAGCTAGTGTTGGACTGGATAAAAAGCTATACACTTATGACTCGGGGTCTAGAAGGCACACATCTCTCATT TCTTACGAGGCACCTTTTTCTTCACTGTCTTTTAGAGATGATGGTTGGGTTCTGGCTGCTGGAACCAGCAGTGGTAGGGTAGTGTTCTATGATGTTCGAG GAAAACCACAGCCTTTCACTGTACTTCGTGCTTATGGCAGTTCAGAGGCTGTTACTGGTTTATGCTGGCAAAGATCAAAACCAGTTATTGTAAATGAGAG CAACTGCACTGCTGAGATAGCTCTTTTGGGAGGTGCTGTTGATGATTCCATTCTTATGCCAGATCCACTTCCTTCTGTAACATCATCTAGTGTTGCTCTA TCCTCAGTGTCTGGCTCTGGTAATTCTGGTCGTTCAGGTCCTGCATTAGAATCGTCATCTCTTACAGCAACTGTTGGTGGACCTGCATCAAGTATACCCA ATCTGTCTTTAGCAGAGGAAACGCCACATCGAAGCCATCTTTGGCCTGGAACATTGACCAGATTAAATCCACCTCGTTCTAGTTACAATTTTAAGGATGA AATGGAGGTGTTCTCCCCACTAGTGGATGTTCAGCCTATCACGCCCTCACTTGATAAGTTTTGGACTGATCACGAGGGATTGAAAAAGGATAATCTGCCT GTTGATAAGAAGCCTTCATCATTGTTGTTTCCTTCATCTAGTAGGAGATTTCCTTTTGCAGAGGATGGGACCAATGATCATCCAATATTTGATTGGAAAT CTAGTTCAACTTCAAGACAGGATGACACCCAGTCTTTCACATCACTAGGGGGTTCTACTCCTACTCCATCTTCCAAGAGTGAAGATTCCTCCATCACTCC TCCAGAAGCTTGGGGTGGTGAGAGGTTATCTGATAAAATTGCTCACCTACGCCAGCCACTCAATTTGCCACCACGTTTTGGGATGACTTCTGGGAGTTCA ACATCAGGATCAATGTTCTCTAGTTTGCAAGATCTGCCCTCTTCAACGAGTCAGTCAAGTATGAGCTCATTGACTAGTTCCAGCCGTGGCTTTTCAAATC TGCGCGCCAGAGATGTATCTTTGACTCAGGAGACGTCAGTGGGATTTCCAGAACACATTTCCTCTAGTTCCATGTTTCTGTCTTTAGGTGCAAAAGGCAT CACAGGACCAGCTAACCTTGAAACATCAGGACCAGCATCATTAAACTTACCTCGCAGGTTTTCAACATATGCTGAGAGAATAAGCACTACTTCTTCCTTT AGTGATGGAACATCCCTCTCTGTGGGTTCACCAAAAACAAAGAAAACCGGAGTTGAAACTAGGGAAGAACTGTTGAATAGCCTGTTGTTGAGGTCTGATG CATTGGCTGTCACTGAACCAGGAATTGTTCCAGCAATGAATGGAGGAGCCGCACAGCCGCACAAAGCTCTTCAGCCAGATACACAGCAGGGGAGTTCCTT CACTCTTCAACTCTTCCAGCGCACTCTTGAAGAAACTCTTGATTCATTTCAGAAATCCATACATGAAGATATGAGGAACCTTCATATAGAAATTCTTAGA CAATTTCATATGCAGGAGGTGGAATTTTCTAGTGTGATGAGCTCAATCCTGGAAAACCAAGCTGAGCTGATGAAAGAAATCAAGACCCTTAGGAAAGAAA ACCAAGAACTCCGCCAATTGCTTTGA
AA sequence Show only first row Show all	>Potri.008G060700.2 pacid=42807743 polypeptide=Potri.008G060700.2.p locus=Potri.008G060700 ID=Potri.008G060700.2.v4.1 annot-version=v4.1 MQRNNNTSSTLTFKFIFLITLLSLSLSLSLLPLLSKLIARMMNLADPSMALLAASGGDTVKLFDVSVEPGDPCTLSYTPTPGCLVNAVKWNHTNLVVASA GEDKKISLWRKNGQSMGTIPVSGTDSGDSIEESILAISFSNKGSRYICSGGSGQVVRIWDLQRKRCIKWLRGHTSPITGAMYNCKDEHLASISLSGDLIL HNLASGARATELKDPNKQVLRVLDYSRVSRHLLVTAGDDGSVHLWDTTGRSPKVSWSKQHSAPTAGISFSPSNDKIIASVGLDKKLYTYDSGSRRHTSLI SYEAPFSSLSFRDDGWVLAAGTSSGRVVFYDVRGKPQPFTVLRAYGSSEAVTGLCWQRSKPVIVNESNCTAEIALLGGAVDDSILMPDPLPSVTSSSVAL SSVSGSGNSGRSGPALESSSLTATVGGPASSIPNLSLAEETPHRSHLWPGTLTRLNPPRSSYNFKDEMEVFSPLVDVQPITPSLDKFWTDHEGLKKDNLP VDKKPSSLLFPSSSRRFPFAEDGTNDHPIFDWKSSSTSRQDDTQSFTSLGGSTPTPSSKSEDSSITPPEAWGGERLSDKIAHLRQPLNLPPRFGMTSGSS TSGSMFSSLQDLPSSTSQSSMSSLTSSSRGFSNLRARDVSLTQETSVGFPEHISSSSMFLSLGAKGITGPANLETSGPASLNLPRRFSTYAERISTTSSF SDGTSLSVGSPKTKKTGVETREELLNSLLLRSDALAVTEPGIVPAMNGGAAQPHKALQPDTQQGSSFTLQLFQRTLEETLDSFQKSIHEDMRNLHIEILR QFHMQEVEFSSVMSSILENQAELMKEIKTLRKENQELRQLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05970		NEDD1	NEURAL PRECURSOR CELL EXPRESSE...		Potri.008G060700 [exp]	0	1
AT5G13000		CALS3, ATGSL12	callose synthase 3, glucan syn...		Potri.003G214200 [exp]	5.47	0.8198	CALS1.4
AT2G46180		GC4	golgin candidate 4 (.1)		Potri.002G165500 [exp]	7.07	0.7997
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Potri.001G416100 [exp]	10.39	0.7987
AT5G07630			lipid transporters (.1)		Potri.001G126200 [exp]	10.67	0.8190
AT1G79620			Leucine-rich repeat protein ki...		Potri.016G144100 [exp]	15.39	0.8066
AT1G76270			O-fucosyltransferase family pr...		Potri.005G249900 [exp]	20.61	0.7793
AT1G18670		IBS1	IMPAIRED IN BABA-INDUCED STERI...		Potri.012G067800 [exp]	26.32	0.7917
AT1G49960			Xanthine/uracil permease famil...		Potri.001G292600 [exp]	35.21	0.7894
AT3G61650		TUBG1	gamma-tubulin (.1)		Potri.014G094900 [exp]	37.46	0.7856	Pt-TUBG1.1,TUBG1
AT5G12870	MYB	ATMYB46	myb domain protein 46 (.1)		Potri.009G053900 [exp]	44.11	0.7850

Compare expression of checked genes

Potri.008G060700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.