Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-TOPP4.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39840 594 / 0 TOPP4 type one serine/threonine protein phosphatase 4 (.1) AT5G59160 568 / 0 PPO, TOPP2 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) AT2G29400 548 / 0 PP1-AT, TOPP1 type one protein phosphatase 1 (.1) AT3G46820 545 / 0 TOPP5 type one serine/threonine protein phosphatase 5 (.1) AT1G64040 519 / 0 TOPP3 type one serine/threonine protein phosphatase 3 (.1) AT4G11240 518 / 0 TOPP7 Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT5G43380 500 / 4e-180 TOPP6 type one serine/threonine protein phosphatase 6 (.1.2.3) AT5G27840 487 / 6e-175 TOPP8 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2) AT3G05580 480 / 3e-172 TOPP9 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT5G55260 288 / 1e-96 EP128, PPX-2, PPX2 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G197600 [exp] 636 / 0 AT2G39840 602 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.013G045900 [exp] 562 / 0 AT2G39840 564 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.019G018000 [exp] 557 / 0 AT2G39840 554 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.008G166300 [exp] 552 / 0 AT2G39840 545 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.009G037700 [exp] 551 / 0 AT5G59160 553 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Potri.001G245700 [exp] 550 / 0 AT2G29400 556 / 0.0 type one protein phosphatase 1 (.1) Potri.001G098600 [exp] 536 / 0 AT4G11240 582 / 0.0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Potri.016G142700 [exp] 494 / 6e-178 AT2G39840 493 / 1e-177 type one serine/threonine protein phosphatase 4 (.1) Potri.006G113100 [exp] 489 / 1e-175 AT2G39840 488 / 4e-175 type one serine/threonine protein phosphatase 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004692 [exp] 632 / 0 AT2G39840 596 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10030163 [exp] 626 / 0 AT2G39840 602 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10040259 [exp] 626 / 0 AT2G39840 590 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10001025 [exp] 623 / 0 AT2G39840 602 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10016489 [exp] 565 / 0 AT5G59160 570 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Lus10004989 [exp] 560 / 0 AT5G59160 565 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Lus10042559 [exp] 559 / 0 AT2G39840 564 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10022019 [exp] 559 / 0 AT2G39840 565 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10011827 [exp] 517 / 0 AT2G39840 513 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10021872 [exp] 516 / 0 AT2G39840 523 / 0.0 type one serine/threonine protein phosphatase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [poplar] [flax] Calcineurin PF00149 [poplar] [flax] Metallophos Calcineurin-like phosphoesterase CL0163 [poplar] [flax] PF16891 [poplar] [flax] STPPase_N Serine-threonine protein phosphatase N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.008G060800.3 pacid=42806647 polypeptide=Potri.008G060800.3.p locus=Potri.008G060800 ID=Potri.008G060800.3.v4.1 annot-version=v4.1 ATGGCTACACAAGGGCAGGCGGCGATGGACCCCGCCGTACTAGATGATATAATCAGACGGTTAACAGAAGTCCGATCAGCCAGACCAGGCAAGCAAGTTC AGCTATCGGAGGCTGAGATCAAGCAACTCTGTGTTGCTTCTCGTGATATTTTCCTTAAACAACCTAATCTGCTCGAGCTTGAAGCCCCCATCAAGATATG CGGTGACATTCACGGGCAGTATAGTGATTTATTGAGACTTTTTGAGTATGGAGGTTTTCCTCCTGAAGCCAATTATCTATTTTTAGGGGACTACGTTGAT CGAGGAAAGCAAAGTTTGGAAACTATATGCCTTTTGCTTGCCTATAAGATTAAATATCCAGAGAACTTCTTTCTTCTACGAGGAAACCATGAATGTGCTT CTATAAATCGGATATATGGATTTTACGATGAATGTAAGCGGCGGTTTAATGTGAGGCTATGGAAATCCTTCACTGACAGTTTCAACTGCCTCCCTGTTGC TGCTTTGATAGACGACAAGATATTGTGCATGCATGGTGGTCTTTCCCCTGATTTGACCAATTTGGATCAAATTAGAAACTTGCCTCGCCCAATTGCTGTT CCGGACACTGGCTTGCTTTGTGATTTACTCTGGTCAGATCCTTGTAGAGATGTTAAGGGATGGGGGATGAATGATAGAGGAGTTTCATACACCTTTGGTC CTGATAAGGTGCAAGAATTTCTGACAAAGCATGATTTAGACCTTGTCTGTCGTGCTCATCAGGTTGTGGAGGATGGGTATGAATTCTTTGCCGACAGGCA ACTTGTTACCATATTTTCAGCTCCCAATTATTGTGGGGAATTTGACAATGCTGGTGCTATGATGAGCGTTGATGAAAATCTGCTGTGCTCCTTTCAAATT TTAAAGCCCGCAGAGAAAAAGGCCAAGTTCATGATGCCAAACAAAATGTGA
AA sequence Show only first row Show all	>Potri.008G060800.3 pacid=42806647 polypeptide=Potri.008G060800.3.p locus=Potri.008G060800 ID=Potri.008G060800.3.v4.1 annot-version=v4.1 MATQGQAAMDPAVLDDIIRRLTEVRSARPGKQVQLSEAEIKQLCVASRDIFLKQPNLLELEAPIKICGDIHGQYSDLLRLFEYGGFPPEANYLFLGDYVD RGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKSFTDSFNCLPVAALIDDKILCMHGGLSPDLTNLDQIRNLPRPIAV PDTGLLCDLLWSDPCRDVKGWGMNDRGVSYTFGPDKVQEFLTKHDLDLVCRAHQVVEDGYEFFADRQLVTIFSAPNYCGEFDNAGAMMSVDENLLCSFQI LKPAEKKAKFMMPNKM

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39840		TOPP4	type one serine/threonine prot...		Potri.008G060800 [exp]	0	1	Pt-TOPP4.2
AT3G49010		RSU2, ATBBC1	40S RIBOSOMAL PROTEIN, breast ...		Potri.001G131000 [exp]	7.61	0.8681	ATBBC1.2
AT3G04400		EMB2171	embryo defective 2171, Ribosom...		Potri.010G066400 [exp]	9.05	0.8489	Pt-RPL23.6
AT4G36130			Ribosomal protein L2 family (....		Potri.007G013101 [exp]	11.22	0.8470
AT2G21060		ATCSP4, ATGRP2B	COLD SHOCK DOMAIN PROTEIN 4, g...		Potri.009G132000 [exp]	12.96	0.7925
AT2G44860			Ribosomal protein L24e family ...		Potri.004G187800 [exp]	13.26	0.8217
AT4G33865			Ribosomal protein S14p/S29e fa...		Potri.009G090000 [exp]	15.87	0.8331
AT3G52580			Ribosomal protein S11 family p...		Potri.001G218700 [exp]	17.94	0.8381
AT2G21060		ATCSP4, ATGRP2B	COLD SHOCK DOMAIN PROTEIN 4, g...		Potri.004G172600 [exp]	18.73	0.7863	Pt-GRP2.3
AT1G57860			Translation protein SH3-like f...		Potri.006G195400 [exp]	20.49	0.8465
AT4G29430		RPS15AE	ribosomal protein S15A E (.1)		Potri.009G071400 [exp]	22.44	0.8199

Compare expression of checked genes

Potri.008G060800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.