Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55640 489 / 2e-175 Mitochondrial substrate carrier family protein (.1) AT3G53940 463 / 1e-164 Mitochondrial substrate carrier family protein (.1) AT2G37890 428 / 3e-151 Mitochondrial substrate carrier family protein (.1) AT4G01100 202 / 2e-62 ADNT1 adenine nucleotide transporter 1 (.1.2) AT4G26180 171 / 9e-51 Mitochondrial substrate carrier family protein (.1) AT5G51050 171 / 7e-49 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) AT5G61810 157 / 4e-45 APC1 ATP/phosphate carrier 1, Mitochondrial substrate carrier family protein (.1.2) AT1G14560 153 / 7e-44 Mitochondrial substrate carrier family protein (.1) AT5G01500 154 / 4e-43 TAAC thylakoid ATP/ADP carrier (.1) AT3G51870 152 / 1e-42 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G197400 [exp] 592 / 0 AT3G55640 488 / 1e-174 Mitochondrial substrate carrier family protein (.1) Potri.016G103300 [exp] 508 / 0 AT3G53940 513 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.006G091900 [exp] 499 / 6e-179 AT3G53940 483 / 4e-172 Mitochondrial substrate carrier family protein (.1) Potri.002G168100 [exp] 207 / 3e-64 AT4G01100 565 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.014G095400 [exp] 206 / 8e-64 AT4G01100 599 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.001G094100 [exp] 202 / 2e-62 AT4G01100 563 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.003G137500 [exp] 201 / 8e-62 AT4G01100 618 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.006G153600 [exp] 168 / 2e-49 AT4G26180 475 / 4e-170 Mitochondrial substrate carrier family protein (.1) Potri.006G226300 [exp] 167 / 6e-49 AT1G14560 476 / 7e-170 Mitochondrial substrate carrier family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004689 [exp] 539 / 0 AT3G55640 482 / 1e-172 Mitochondrial substrate carrier family protein (.1) Lus10021497 [exp] 442 / 3e-156 AT3G53940 496 / 2e-177 Mitochondrial substrate carrier family protein (.1) Lus10022597 [exp] 431 / 7e-152 AT3G53940 486 / 3e-173 Mitochondrial substrate carrier family protein (.1) Lus10040257 [exp] 405 / 6e-143 AT3G55640 358 / 2e-124 Mitochondrial substrate carrier family protein (.1) Lus10024344 [exp] 377 / 3e-131 AT3G53940 417 / 4e-147 Mitochondrial substrate carrier family protein (.1) Lus10012658 [exp] 299 / 5e-101 AT3G53940 327 / 5e-112 Mitochondrial substrate carrier family protein (.1) Lus10033948 [exp] 202 / 3e-62 AT4G01100 604 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10033947 [exp] 202 / 4e-62 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032365 [exp] 201 / 1e-61 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032364 [exp] 190 / 1e-57 AT4G01100 572 / 0.0 adenine nucleotide transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Potri.008G060900.3 pacid=42808454 polypeptide=Potri.008G060900.3.p locus=Potri.008G060900 ID=Potri.008G060900.3.v4.1 annot-version=v4.1 ATGCAGACAGAGGCAAGAGTGGGAGTGGTAGTAGAAGGAGGACCAAGGGCTCTTAATTCACAGCCGAAACAGCACAAGCCATTGCAGCAACAGTATCAGC AATCACAGATCGGGACAGTTTCGCAGCTTGTAGCTGGTGGAGTTGCGGGTGCACTAAGCAAGACTTGCACTGCACCTCTTGCACGCCTCACCATACTCTT TCAGGTGCAAGGCATGCACTCAGATGTTGCGACATTGAGGAAAGCTAGCATATGGCATGAGGCTTCCCGAGTTATCAGAGAGGAAGGAGTTAGAGCTCTT TGGAAAGGGAATCTTGTTACAATTGCTCATCGGCTACCTTACTCGTCAGTCAATTTCTATGCCTACGAGCGCTACAAACAGTTTCTACATATGATTCCTG GCCTGGAAATCCATAGAGAAAGTGCAGGTGTCAACCTGTTCGTCCATTTTGTTGGTGGTGGTTTGGCAGGAATAACAGCAGCATCTGCTACATATCCATT GGATCTTGTGAGGACACGCCTTGCAGCTCAGACAAATGTGATCTATTACAGAGGTATTTGGCATGCCTTGCAAACAATTAGCAGAGAAGAGGGTGTTTTT GGCCTCTACAAGGGACTTGGAGCCACCCTTTTGGGTGTTGGACCCAGTATAGCTATCAGTTTTTCAGTCTATGAGAGTTTACGATCTTTTTGGCATTCCC GCAGGCCCCATGATTCTACTGTTGCTGTGAGTTTGGCTTGTGGTAGCCTTTCAGGCATTGCATCTTCAACAGCAACATTTCCGCTTGATCTTGTGAGACG AAGGAAGCAATTGGAAGGAGCAGGTGGACGGGCCCGTGTTTATACCACAGGTCTTCTTGGTATATTCAAGCACATAATTCAGACCGAGGGATTTCGGGGT CTATACAGAGGCATTATGCCTGAATACTACAAGGTTGTGCCTGGTGTCAGTATCTGTTTTACGACGTATGAGACTCTAAAATTGCTTTTGGCAGATGTTA CTCCCACGATATAA
AA sequence Show only first row Show all	>Potri.008G060900.3 pacid=42808454 polypeptide=Potri.008G060900.3.p locus=Potri.008G060900 ID=Potri.008G060900.3.v4.1 annot-version=v4.1 MQTEARVGVVVEGGPRALNSQPKQHKPLQQQYQQSQIGTVSQLVAGGVAGALSKTCTAPLARLTILFQVQGMHSDVATLRKASIWHEASRVIREEGVRAL WKGNLVTIAHRLPYSSVNFYAYERYKQFLHMIPGLEIHRESAGVNLFVHFVGGGLAGITAASATYPLDLVRTRLAAQTNVIYYRGIWHALQTISREEGVF GLYKGLGATLLGVGPSIAISFSVYESLRSFWHSRRPHDSTVAVSLACGSLSGIASSTATFPLDLVRRRKQLEGAGGRARVYTTGLLGIFKHIIQTEGFRG LYRGIMPEYYKVVPGVSICFTTYETLKLLLADVTPTI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55640			Mitochondrial substrate carrie...		Potri.008G060900 [exp]	0	1
AT4G22540		ORP2A	OSBP(oxysterol binding protein...		Potri.003G111600 [exp]	1.41	0.8683
AT3G49550			unknown protein		Potri.012G004900 [exp]	5.74	0.8765
AT3G02880			Leucine-rich repeat protein ki...		Potri.004G066300 [exp]	14.69	0.8126
AT5G03730		AtCTR1, SIS1, C...	SUGAR-INSENSITIVE 1, CONSTITUT...		Potri.010G234700 [exp]	19.49	0.8201	CTR1.4
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.017G012200 [exp]	20.19	0.8219
					Potri.001G466500 [exp]	26.15	0.8641
AT4G17380		MSH4, ATMSH4	ARABIDOPSIS MUTS HOMOLOG 4, M...		Potri.001G156200 [exp]	29.24	0.8418
AT2G40820			unknown protein		Potri.016G033100 [exp]	34.27	0.8568
AT5G60580			RING/U-box superfamily protein...		Potri.006G024000 [exp]	37.09	0.8489
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Potri.017G135800 [exp]	37.22	0.8093

Compare expression of checked genes

Potri.008G060900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.