Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02030 235 / 6e-71 HD PNY, BLR, BLH9, RPL, HB-6, VAN, LSN VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1) AT2G27990 218 / 2e-64 HD PNF, BLH8 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) AT1G75410 202 / 7e-59 HD BLH3 BEL1-like homeodomain 3 (.1.2) AT2G16400 199 / 4e-58 HD BLH7 BEL1-like homeodomain 7 (.1) AT1G19700 199 / 2e-57 HD BEL10, BLH10 BEL1-like homeodomain 10 (.1.2.3) AT4G34610 198 / 2e-57 HD BLH6 BEL1-like homeodomain 6 (.1.2) AT2G23760 200 / 3e-57 HD BLH4, SAW2 SAWTOOTH 2, BEL1-like homeodomain 4 (.1.2.3) AT4G36870 201 / 5e-57 HD BLH2, SAW1 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) AT2G35940 184 / 6e-51 HD BLH1, EDA29 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) AT5G41410 173 / 1e-47 HD BEL1 BELL 1, POX (plant homeobox) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G197300 [exp] 754 / 0 AT5G02030 241 / 4e-73 VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1) Potri.009G009800 [exp] 223 / 2e-64 AT2G27990 280 / 5e-84 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) Potri.009G009900 [exp] 217 / 2e-62 AT2G27990 262 / 2e-77 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) Potri.007G032700 [exp] 214 / 2e-61 AT4G36870 475 / 7e-157 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) Potri.005G129500 [exp] 214 / 4e-61 AT4G36870 449 / 1e-146 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) Potri.004G213300 [exp] 213 / 8e-61 AT2G27990 253 / 3e-74 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) Potri.006G203000 [exp] 206 / 4e-59 AT2G35940 491 / 9e-166 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.001G100800 [exp] 203 / 3e-58 AT5G41410 440 / 4e-147 BELL 1, POX (plant homeobox) family protein (.1) Potri.004G159300 [exp] 203 / 5e-58 AT4G34610 416 / 2e-138 BEL1-like homeodomain 6 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040256 [exp] 289 / 1e-93 AT2G27990 204 / 3e-60 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) Lus10004688 [exp] 287 / 9e-93 AT5G02030 209 / 9e-62 VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1) Lus10022599 [exp] 264 / 3e-81 AT5G02030 339 / 7e-109 VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1) Lus10021498 [exp] 260 / 8e-80 AT5G02030 339 / 6e-109 VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1) Lus10021452 [exp] 223 / 4e-67 AT2G27990 282 / 7e-89 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) Lus10016110 [exp] 216 / 1e-64 AT2G27990 282 / 1e-88 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) Lus10004201 [exp] 198 / 6e-56 AT2G35940 504 / 1e-170 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10029405 [exp] 195 / 5e-55 AT2G35940 478 / 9e-161 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10013579 [exp] 188 / 2e-53 AT2G35940 427 / 1e-142 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10017481 [exp] 189 / 6e-53 AT4G34610 424 / 1e-141 BEL1-like homeodomain 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF05920 [poplar] [flax] Homeobox_KN Homeobox KN domain CL0123 [poplar] [flax] PF07526 [poplar] [flax] POX Associated with HOX
Representative CDS sequence Show only first row Show all	>Potri.008G061000.1 pacid=42806293 polypeptide=Potri.008G061000.1.p locus=Potri.008G061000 ID=Potri.008G061000.1.v4.1 annot-version=v4.1 ATGGCACAAAACTTTGAACCCTTCCATGTCCCACAACAAAACAGAAAAAACAAGCTTCGTGTCACCACTCAAACCAACCAAGAACAGCAAAACCCACCAA CCCCATTATTCTCTAGACAAACTTTCACTAGCCCTTCACAATCTTCTTCGTTCTTTTCACTTCAAACCCTCAAAGACATGAACTACCAGCCCTTATCTAG CCAGGGTTTATCTTTGTCTCTTTCGTTTCAACTCGATAACCAAAGACACAATGCCGTTTCAGTTTCAGGCGATTCCTTGAAGCAGAATGGTGAAATGAAA AGCTCTGTAGTCCCTTTCGGTCCTTTTACTGGCTACGCTTCAATCTTGAAGACCTCCAGGTTCTTGAAACCTGCGCAGCAGATTTTGGACGATATTTGTG GTATGATTAATTGTGCGAATGCAAACTTTCCTTTGGATGGTTTGAACGAAAGTGAAATTACGAGAGAAAAAAATGCTTTTTTAAGTGATCGGGTAGAGCA TCAATGCAAGAATTCAAAGCTAATATTGATGCTGGATGAGGTATACAGGAGATACAAACTATATTGCCAACACATGCAGTCAGTTGTTGCATCATTTGAA ACTGTTGCTGGTCTTGGAAATGCAGCTCCTTATGTTTGTTATGCGACCAAAATTGTTTTGAAGCATTTTAATAGCTTGAAGAATGCCCTTTTGGATAAAA TTCAGTTCACAGGAAAAAACTTTGATGATAGCAGTGTCACTAAGGAAAAAAATCCTAGACATGGAACAACTGAACGAGGCCTTAGAAACCAAAATCCAAC TCTGAACTTGAACTTCATTCAACATCCTGTTTGGCGATCTCAAAGAGGACTTCCTGATCATGCTGTAGCTGTGCTTAAGACATGGTTGTTTGAACACTTT CTACACCCCTACCCTACAGACTCGGAAAAGCAAGCCTTGGCTCAGCAGACAGGTCTATCAAGGACTCAGGTTTCTAATTGGTTTATAAACGCAAGAGTTA GACTTTGGAAGCCAATGGTGGAAGAAGTACACATGCTTGAATCACAGCAAACTCAAGCACCATTTGACACGGTCAGTCAGAGTGCCAACATTGCATCTGA TTTGCCTCTTGAGAAACAGCCCCGATCAACTCAACACCAGAACGCATACCAAACTAAACGCCTCCGAAATGAACTTCCTGATGTATCTAAGCAGAGACAG GAGCCAAGAAATATTTGTGTCAACAATTTGTCAGGTAATTACCACTCTGCTGGTGTTAGTGGAAGCAAAGGTGTTTCATTGGCATTGGGTCTTCCACAGA ATAATCGCACTGATCAATCGTGGCCTCTCCCTATGAGCATACCTCACCATGTCAACCTGGAAATGATTAGCATGATGGATTCAGCTCCAGGAACAGGTTT TGAACTACAAAAGCAGCATTTTGGGAAAGACTAG
AA sequence Show only first row Show all	>Potri.008G061000.1 pacid=42806293 polypeptide=Potri.008G061000.1.p locus=Potri.008G061000 ID=Potri.008G061000.1.v4.1 annot-version=v4.1 MAQNFEPFHVPQQNRKNKLRVTTQTNQEQQNPPTPLFSRQTFTSPSQSSSFFSLQTLKDMNYQPLSSQGLSLSLSFQLDNQRHNAVSVSGDSLKQNGEMK SSVVPFGPFTGYASILKTSRFLKPAQQILDDICGMINCANANFPLDGLNESEITREKNAFLSDRVEHQCKNSKLILMLDEVYRRYKLYCQHMQSVVASFE TVAGLGNAAPYVCYATKIVLKHFNSLKNALLDKIQFTGKNFDDSSVTKEKNPRHGTTERGLRNQNPTLNLNFIQHPVWRSQRGLPDHAVAVLKTWLFEHF LHPYPTDSEKQALAQQTGLSRTQVSNWFINARVRLWKPMVEEVHMLESQQTQAPFDTVSQSANIASDLPLEKQPRSTQHQNAYQTKRLRNELPDVSKQRQ EPRNICVNNLSGNYHSAGVSGSKGVSLALGLPQNNRTDQSWPLPMSIPHHVNLEMISMMDSAPGTGFELQKQHFGKD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G02030	HD	PNY, BLR, BLH9,...	VAAMANA, REPLUMLESS, PENNYWISE...		Potri.008G061000 [exp]	0	1
AT5G06470			Glutaredoxin family protein (....		Potri.006G201300 [exp]	3.16	0.9074
AT5G58300			Leucine-rich repeat protein ki...		Potri.019G062100 [exp]	3.87	0.8944
AT2G25270			unknown protein		Potri.006G258700 [exp]	4.00	0.9019
AT4G10050			esterase/lipase/thioesterase f...		Potri.013G099900 [exp]	11.31	0.8941
AT5G04700			Ankyrin repeat family protein ...		Potri.008G023500 [exp]	12.96	0.8685
AT5G59350			unknown protein		Potri.010G206100 [exp]	13.41	0.8638
AT3G13410			unknown protein		Potri.012G124888 [exp]	14.42	0.8808
AT5G25530			DNAJ heat shock family protein...		Potri.006G246700 [exp]	15.00	0.8442
AT5G08350			GRAM domain-containing protein...		Potri.005G088700 [exp]	16.52	0.8404
AT5G06470			Glutaredoxin family protein (....		Potri.016G067700 [exp]	18.00	0.8423

Compare expression of checked genes

Potri.008G061000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.