Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53960 697 / 0 Major facilitator superfamily protein (.1) AT2G37900 689 / 0 Major facilitator superfamily protein (.1) AT2G02040 447 / 9e-151 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT5G01180 440 / 2e-148 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT3G54450 436 / 6e-147 Major facilitator superfamily protein (.1) AT3G54140 432 / 2e-145 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT2G40460 432 / 4e-145 Major facilitator superfamily protein (.1) AT1G62200 431 / 1e-144 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT5G46040 408 / 8e-136 Major facilitator superfamily protein (.1) AT5G46050 406 / 5e-135 ATPTR3, PTR3 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G092000 [exp] 778 / 0 AT2G37900 777 / 0.0 Major facilitator superfamily protein (.1) Potri.016G103500 [exp] 771 / 0 AT2G37900 776 / 0.0 Major facilitator superfamily protein (.1) Potri.010G100200 [exp] 455 / 4e-154 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.011G120000 [exp] 437 / 3e-147 AT2G02040 809 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.002G258900 [exp] 437 / 1e-146 AT5G46050 730 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.008G170100 [exp] 436 / 1e-146 AT5G46050 816 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.T124706 [exp] 432 / 1e-145 AT3G54450 662 / 0.0 Major facilitator superfamily protein (.1) Potri.003G197333 [exp] 431 / 4e-145 AT3G54450 663 / 0.0 Major facilitator superfamily protein (.1) Potri.001G027100 [exp] 429 / 5e-144 AT3G54450 695 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024340 [exp] 743 / 0 AT2G37900 775 / 0.0 Major facilitator superfamily protein (.1) Lus10012663 [exp] 656 / 0 AT2G37900 696 / 0.0 Major facilitator superfamily protein (.1) Lus10040099 [exp] 450 / 5e-152 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10030947 [exp] 450 / 5e-152 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10003614 [exp] 436 / 1e-146 AT5G46050 726 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10011055 [exp] 433 / 1e-145 AT2G02040 847 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10000670 [exp] 431 / 1e-144 AT2G02040 849 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10018207 [exp] 427 / 3e-141 AT5G01180 818 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10011786 [exp] 422 / 5e-141 AT5G46050 831 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10008232 [exp] 437 / 8e-141 AT5G46050 729 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.008G061100.1 pacid=42806058 polypeptide=Potri.008G061100.1.p locus=Potri.008G061100 ID=Potri.008G061100.1.v4.1 annot-version=v4.1 ATGGAGCAACCGGAGAACAGGAAAGTAGGACGTGAAGCTAAAGAATCAGACGAGGAAGAGAAATGGGTTCGTGATTCTTCCGTCGATTATAAGGGAAGAG TTCCTCTTCGAAGTTCAACTGGAGTCTGGACAGCCTCTCTTTTTATCATCACAAATGAGTTTAGTGAGAGGCTTAGCAACTTCGGAATAACTGCCAATCT CATCTCATACCTCACCAAAGTGATCCATCAAGACCTCAAAACAGCAGCAAAGAGTGTGAACTATTGGGCAGGAGTAACAACAATGATGCCCTTGTTTGGA GGGTTCCTAGCTGATGCCTACACAGGCCGGTTTTCAATGGTCCTGCTATCATCCCTCGTATATCTTTTGGGTCTGAGCCTCTTGACAATGTCCCAGTTCA TTCCAAGTCTAAAACCATGCGATGTAGGGGGGTGTGAAAAGGCAAGAAAGATCCATGAAGTGGCTTTTTTCCTTGCTATGTATTCCATCTCCCTTGGAAC AGGAGGTCACAAGCCATGCCTCCAGAGCTTCGGAGCTGATCAGTTCGATGATGATCACGCTGAAGAAAGGAAGAAGAAGCTGTCTTACTTCAATTGGTGG AACATTGCAGTTTGTTGCGGCCTCTTCCTTGGAGTAACAGTCATAGTTTACATCGAAGACAACATGAGCTGGGGTGTTGCAATCCTTATTCTCACTATTA CAATGGCTGTTACTGTAGCAACATTCTATATGGGAAAGCCTTATTACCGATATAGGTTACCAGAAGGGAGTGGTTCGACATCCATGTTGCAGGTTTTGGT TGCAGCTATAAGGAAGAGAAAATTACCTTCTCCTTCTAATCCTGCTCTTCTATATGAAGTCCCCAATTATAAAATCCAAGGCAGACTTTTAGGACACACA GACAGGCTCACGTTTCTAGATAAAGCTGCAGTGCTTGAAGAGGAGGAAATTTCAAATGAGGTGAAACATAACCCTTGGAGACTAGCAACAGTGACAAAAG TAGAGGAGATGAAGCTTGTTCTGAACATAATTCCTATATGGTTAACTTCATTACCATTTGGATTATGTGTGGTACAAACAGCAACATTCTTTGTTAAACA AGGGGCTACGCTCAACAGAAAGATAGGTCACAATTTTGAGATCCCACCAGCCTCCATTTTTTCTCTCTCGGCCGTCGGGATGATTATCTCTGTGGTCATC TATGACAAAATTCTTGTTCCATTTTTAAGGAGAGCTACCGGCAATGAAAGAGGCATTAGTGTCCTCAAAAGAATTGGTAGTGGCTTGATTTTTTCCGTAG TAGCCATGTCGGTTGCAGCCTTGGTTGAAAGGAAGAGACAAAAGATTGCCGAAGAGGATATTGATGTGCTAGACGGAGAGAAAAATGTGGAATTGCCAAT GAGCGTGTTCTGGCTGGCACCCCAATTCTTGATTCTCGGCCTGGGAGATGGGTTCACTTTGGTTGGCCTGCAAGAGTTTTTTTATGACCAAGTTCCTGAT TCAATGAGAAGTTTGGGCATGGCTTTTTTTCTTAGTGTGCTTGGAGCTGGGAACTTTTTAAGTAGCTTTCTAATAACCGCCGTGGATCGTATTACAGAGA AAGATGGCAAAGGTTGGATTGGCAAGGACCTGAACTCCAGTCGCTTGGACAAATTTTACTGGCTTTTGGCAGCCATCAATTCCGTGAATATATTTGTTTA TGTGCTCTTTGCGAGGAGGTATACTTACAAAACTGTGCAGAGAAGGTTGACTGCGACTCATTTGAACAAGGATGATGGGATGGAGTTGATGCCCTGA
AA sequence Show only first row Show all	>Potri.008G061100.1 pacid=42806058 polypeptide=Potri.008G061100.1.p locus=Potri.008G061100 ID=Potri.008G061100.1.v4.1 annot-version=v4.1 MEQPENRKVGREAKESDEEEKWVRDSSVDYKGRVPLRSSTGVWTASLFIITNEFSERLSNFGITANLISYLTKVIHQDLKTAAKSVNYWAGVTTMMPLFG GFLADAYTGRFSMVLLSSLVYLLGLSLLTMSQFIPSLKPCDVGGCEKARKIHEVAFFLAMYSISLGTGGHKPCLQSFGADQFDDDHAEERKKKLSYFNWW NIAVCCGLFLGVTVIVYIEDNMSWGVAILILTITMAVTVATFYMGKPYYRYRLPEGSGSTSMLQVLVAAIRKRKLPSPSNPALLYEVPNYKIQGRLLGHT DRLTFLDKAAVLEEEEISNEVKHNPWRLATVTKVEEMKLVLNIIPIWLTSLPFGLCVVQTATFFVKQGATLNRKIGHNFEIPPASIFSLSAVGMIISVVI YDKILVPFLRRATGNERGISVLKRIGSGLIFSVVAMSVAALVERKRQKIAEEDIDVLDGEKNVELPMSVFWLAPQFLILGLGDGFTLVGLQEFFYDQVPD SMRSLGMAFFLSVLGAGNFLSSFLITAVDRITEKDGKGWIGKDLNSSRLDKFYWLLAAINSVNIFVYVLFARRYTYKTVQRRLTATHLNKDDGMELMP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G53960			Major facilitator superfamily ...		Potri.008G061100 [exp]	0	1
AT5G67550			unknown protein		Potri.017G023400 [exp]	4.69	0.7852
					Potri.001G422900 [exp]	9.21	0.7520
					Potri.007G119351 [exp]	9.53	0.7361
AT1G69010	bHLH	bHLH102, BIM2	BES1-interacting Myc-like prot...		Potri.017G101700 [exp]	10.00	0.7540
AT5G38470		RAD23D	RADIATION SENSITIVE23D, Rad23 ...		Potri.008G119700 [exp]	15.00	0.7145
AT5G07610			F-box family protein (.1)		Potri.013G065500 [exp]	15.09	0.7511
AT5G17680			disease resistance protein (TI...		Potri.019G070300 [exp]	16.61	0.7671
AT1G53440			Leucine-rich repeat transmembr...		Potri.001G386300 [exp]	18.81	0.7639
AT3G58480			calmodulin-binding family prot...		Potri.015G125950 [exp]	24.65	0.7284
AT5G17680			disease resistance protein (TI...		Potri.019G070479 [exp]	25.92	0.7509

Compare expression of checked genes

Potri.008G061100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.