Plant FIBer expression Database

Potri.008G061700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G55646 75 / 7e-18 unknown protein
AT2G39855 71 / 4e-16 unknown protein
AT5G59080 69 / 1e-15 unknown protein
AT5G02020 64 / 1e-13 SIS Salt Induced Serine rich, unknown protein
AT5G05965 39 / 0.0004 unknown protein
AT3G46880 0 / 1 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G196400
[exp]
199 / 1e-66 AT2G39855 86 / 4e-22 unknown protein
Potri.009G038300
[exp]
104 / 4e-29 AT5G59080 104 / 2e-29 unknown protein
Potri.006G092400
[exp]
76 / 3e-18 AT5G02020 122 / 2e-36 Salt Induced Serine rich, unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021101
[exp]
58 / 6e-11 AT5G02020 117 / 1e-33 Salt Induced Serine rich, unknown protein
Lus10009870
[exp]
44 / 4e-06 AT2G39855 62 / 4e-13 unknown protein
Lus10040250
[exp]
44 / 7e-06 AT2G39855 64 / 1e-13 unknown protein
Lus10004678
[exp]
42 / 4e-05 AT2G39855 67 / 2e-14 unknown protein
Lus10017209
[exp]
40 / 0.0003 AT3G09270 93 / 5e-23 glutathione S-transferase TAU 8 (.1)
PFAM info
Representative CDS sequence
>Potri.008G061700.1 pacid=42808393 polypeptide=Potri.008G061700.1.p locus=Potri.008G061700 ID=Potri.008G061700.1.v4.1 annot-version=v4.1
ATGGAAAACAACAGGCAAGTCGGTGCTTCTTCTTTTGATCATCTTTTTGGTCCTAAAGACTCTTCCTCTTCATCATCCGCCTCAAGTGGGATATTTGGGT
CCATTTTCCCTCCTCCATCGAAGGTGCCAGCTGGAAGGGACTCTGGAACTACGGGTAATCATGTTGGGAATGAAACATATGTGAATCCAGATAATGCCAC
TCGGAAAGCCAAGGGAGAGAGCAGCGGCATAAGTGGCAAAGGCCAGAGTTCAGTTTATCAGAACGAAACGCCAGAACCATGCTATTTTAGTTCGTCAATC
TACTATGGTGGCCAAGAAAACTATTCCCCAAGGACCAAGAACGCAGAATCTCAACATGTTTTCAAGAAAGATTATGGAAAGGATGATCCAAATGGCAACG
ATCCAAACAGCGCTTCAAGAGGGAACTGGTGGCAGGGTTCACTATATTATTAA
AA sequence
>Potri.008G061700.1 pacid=42808393 polypeptide=Potri.008G061700.1.p locus=Potri.008G061700 ID=Potri.008G061700.1.v4.1 annot-version=v4.1
MENNRQVGASSFDHLFGPKDSSSSSSASSGIFGSIFPPPSKVPAGRDSGTTGNHVGNETYVNPDNATRKAKGESSGISGKGQSSVYQNETPEPCYFSSSI
YYGGQENYSPRTKNAESQHVFKKDYGKDDPNGNDPNSASRGNWWQGSLYY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G55646 unknown protein Potri.008G061700
[exp]
0 1
Potri.018G131900
[exp]
1.73 0.9607
AT4G18250 receptor serine/threonine kina... Potri.017G009600
[exp]
5.47 0.9567
AT4G35160 O-methyltransferase family pro... Potri.019G093200
[exp]
5.83 0.9380
AT2G31083 AtCLE5, CLE5, C... CLAVATA3/ESR-RELATED 5 (.1) Potri.001G376200
[exp]
6.16 0.9363
AT2G01900 DNAse I-like superfamily prote... Potri.018G144101
[exp]
6.92 0.9400
AT5G07440 GDH2 glutamate dehydrogenase 2 (.1.... Potri.015G111000
[exp]
9.79 0.9245
AT2G33560 BUBR1 BUB1-related (BUB1: budding un... Potri.002G002900
[exp]
15.00 0.9404
AT1G10010 AAP8, ATAAP8 amino acid permease 8 (.1) Potri.006G236000
[exp]
15.55 0.9333
Potri.018G003650
[exp]
17.66 0.9130
Potri.001G227750
[exp]
19.59 0.9479

Potri.008G061700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.