Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05940 665 / 0 ATROPGEF5, ROPGEF5 ROP guanine nucleotide exchange factor 5 (.1) AT5G02010 602 / 0 ATROPGEF7, ROPGEF7 RHO guanyl-nucleotide exchange factor 7 (.1) AT3G55660 546 / 0 ATROPGEF6, ROPGEF6 ROP (rho of plants) guanine nucleotide exchange factor 6 (.1) AT4G38430 478 / 6e-163 ATROPGEF1, ROPGEF1 rho guanyl-nucleotide exchange factor 1 (.1) AT4G00460 431 / 1e-145 ATROPGEF3, ROPGEF3 RHO guanyl-nucleotide exchange factor 3 (.1.2) AT1G01700 417 / 4e-140 ATROPGEF2, ROPGEF2 RHO guanyl-nucleotide exchange factor 2 (.1) AT2G45890 385 / 7e-128 RHS11, ATROPGEF4, ROPGEF4 ROOT HAIR SPECIFIC 11, RHO guanyl-nucleotide exchange factor 4 (.1) AT3G24620 359 / 5e-117 ATROPGEF8, ROPGEF8 RHO guanyl-nucleotide exchange factor 8 (.1) AT1G52240 354 / 3e-114 PIRF1, ATROPGEF11, ROPGEF11 phytochrome interacting RopGEF 1, RHO guanyl-nucleotide exchange factor 11 (.1.2) AT4G13240 347 / 1e-112 ATROPGEF9, ROPGEF9 RHO guanyl-nucleotide exchange factor 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G196000 [exp] 1001 / 0 AT5G05940 659 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Potri.006G092600 [exp] 713 / 0 AT5G02010 676 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Potri.016G104400 [exp] 700 / 0 AT5G02010 632 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Potri.004G179742 [exp] 494 / 4e-169 AT4G38430 729 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.009G140100 [exp] 491 / 1e-167 AT4G38430 715 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.014G084200 [exp] 459 / 9e-157 AT4G00460 673 / 0.0 RHO guanyl-nucleotide exchange factor 3 (.1.2) Potri.002G159700 [exp] 456 / 2e-155 AT4G00460 662 / 0.0 RHO guanyl-nucleotide exchange factor 3 (.1.2) Potri.005G247100 [exp] 449 / 1e-151 AT4G38430 553 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.002G014100 [exp] 435 / 3e-146 AT4G38430 592 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009874 [exp] 754 / 0 AT5G05940 643 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10000399 [exp] 738 / 0 AT5G05940 630 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10004676 [exp] 728 / 0 AT5G05940 667 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10040248 [exp] 727 / 0 AT5G05940 661 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10021500 [exp] 646 / 0 AT5G02010 664 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Lus10022601 [exp] 641 / 0 AT5G02010 662 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Lus10023983 [exp] 477 / 8e-162 AT4G38430 696 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Lus10025101 [exp] 475 / 2e-161 AT4G38430 683 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Lus10005644 [exp] 427 / 2e-143 AT4G38430 520 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Lus10021234 [exp] 422 / 1e-141 AT4G38430 525 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03759 [poplar] [flax] PRONE PRONE (Plant-specific Rop nucleotide exchanger)
Representative CDS sequence Show only first row Show all	>Potri.008G062000.1 pacid=42808101 polypeptide=Potri.008G062000.1.p locus=Potri.008G062000 ID=Potri.008G062000.1.v4.1 annot-version=v4.1 ATGGAAACAATGTTTAAGGGGAGTTGTGGTGGTGGAGGATTTGAGAGGAGGAGGAAAGATGAGTCTGAGTTACTGACCGAGTCTGGGACCGAGTCAAGAG AGAGTAGCAGCTCGAGTTCTGAGAGTAGCTCAACTGAGGGAGTTAAGCCCGGGTGTGCTTCCCCATCTCCTTTGGGTTGGCCTATAAGGAAAGCTGGAGA GTGCAAGAGCTTTGTCTCTAGTGGAAATGGAAGTAAAGAGAAGAAAGCCCATTTGGAGGATTCAAAATTCAAAAAGCTAGGCTCAAAGCTTTCAGAGATT GACATGATAAAGGAGAGGTTTGCAAAATTGTTGCTTGGTGAAGATATGTCAGGGTCTGGGAAAGGGGTTTGCACAGCTCTGGCTATATCAAATGCCATCA CCAATTTGTGTGGTACTATTTATGGGCAACTTTGGAGACTAGAGCCATTGCCTGAAGAGAAGAAATCAATGTGGAGAAGAGAGATGGAGTTGCTTCTTTG TGTTGGAGACCATATCGTGGAATTAATACCCTCATGGCAGACATTTCCTGATGGTAGTAAGCTTGAGGTTATGACTTGCAGGCCTAGATCCGATCTTTTT ATCAATCTGCCAGCTCTGCGTAAACTAGACAATATGCTTCTTGAAGTTTTAGATAGTTTCGTAGACACGGAGTTTTGGTATGTTGATCAAGGGATTGTAG CCCCAGATGGAGATGGGTCAGCTTCTTTCCGTAAAACAATGCAGAGGCAAGAAGAAAAATGGTGGCTACCAGTCCCTCGTGTCCCTGCTGGTGGTCTCAG TGATGATACAAGAAAGCAGTTGAACCACACGCGTGAATGCACCAATCAGATACTGAAAGCTGCAATGGCAATCAACAGTGTCGCTTTAGCTGAAATGGAT GTTCCTGACTCGTACTTGGAAGCTCTCCCAAAGAATGGAAGAGCTTGTTTGGGAGACCTTGTGTACCGGTATATTACTTCAGACCAGTTCTCCGCAGAGT GCCTGCTCGATTGCCTTGACCTGTCATCTGAACATGTTGCTTTAGAGATTGCAAACCGTGTGGAATCTTCAATTTATGTATGGCGTCGGAGAGCTCATTC AAGACCTCCACCCAATCCAAATCGCTCCATGACAAAGTCATCATGGGAGATGGTCAAGGACTTAATGGTTGACGGAGATAAGAGGGAATTGCTTGCAGAA AGAGCTGAAAGTCTCTTGCTTTCCTTGAAGCATAGGTTCCCTAATCTAACCCAGACCGCCTTGGATACCAGCAAAATTCAATTCAACAAGGATGTTGGGA AATCAATTCTCGAGAGCTATTCAAGAGTTCTGGAGAGCTTGGCATTTAATATTGTAGCTCGTATTGACGACTTGGTATACGTTGATGACTTGACTAAACG TTCGGACAATTTGTCTTCAGTTTCCACAGTTGCTGTGATTTCTCACAGGAAGGTTTCAAATCCCTTCTCCGTGCCAGTCTCAGGCACTCCATACAAAACA ACGTTCAGTACACCGAGCTTTTCACCCGTGCCGCTTATTAGTCCTGCAAGGGGTGAGAGAACTCCATTCCTCCACAGTACCACCTCCTCCAAAAGCAATA ACAACAAGCCTCCTCGTCGTGGTTTTGGTGTGAAGAGGGCGCTGACAAACTATCTTGCTGTGGATTCAAAACCCAAGATCTGTGGCAATACAAATGTTGA TTCAAAACCCAAGATCTGTGGCAATACAAATGTTGATTCAAAACCCAAGATCTGTGGTAATACAAATGAAGGATCGTGTCCAAATCCAAAGACAAATGGC AGAGAGGATTTGGGGCCGGAAAAGAACTCACCGACCCAAAAAAATGGGACTAAATTGCGTCAAAGTGCTCCCAAATATATTGTAACTTGA
AA sequence Show only first row Show all	>Potri.008G062000.1 pacid=42808101 polypeptide=Potri.008G062000.1.p locus=Potri.008G062000 ID=Potri.008G062000.1.v4.1 annot-version=v4.1 METMFKGSCGGGGFERRRKDESELLTESGTESRESSSSSSESSSTEGVKPGCASPSPLGWPIRKAGECKSFVSSGNGSKEKKAHLEDSKFKKLGSKLSEI DMIKERFAKLLLGEDMSGSGKGVCTALAISNAITNLCGTIYGQLWRLEPLPEEKKSMWRREMELLLCVGDHIVELIPSWQTFPDGSKLEVMTCRPRSDLF INLPALRKLDNMLLEVLDSFVDTEFWYVDQGIVAPDGDGSASFRKTMQRQEEKWWLPVPRVPAGGLSDDTRKQLNHTRECTNQILKAAMAINSVALAEMD VPDSYLEALPKNGRACLGDLVYRYITSDQFSAECLLDCLDLSSEHVALEIANRVESSIYVWRRRAHSRPPPNPNRSMTKSSWEMVKDLMVDGDKRELLAE RAESLLLSLKHRFPNLTQTALDTSKIQFNKDVGKSILESYSRVLESLAFNIVARIDDLVYVDDLTKRSDNLSSVSTVAVISHRKVSNPFSVPVSGTPYKT TFSTPSFSPVPLISPARGERTPFLHSTTSSKSNNNKPPRRGFGVKRALTNYLAVDSKPKICGNTNVDSKPKICGNTNVDSKPKICGNTNEGSCPNPKTNG REDLGPEKNSPTQKNGTKLRQSAPKYIVT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05940		ATROPGEF5, ROPG...	ROP guanine nucleotide exchang...		Potri.008G062000 [exp]	0	1
AT1G76540		CDKB2;1	cyclin-dependent kinase B2;1 (...		Potri.002G003400 [exp]	19.59	0.8308	CDKB2.1
AT4G33400			Vacuolar import/degradation, V...		Potri.002G126500 [exp]	22.38	0.8280
AT1G20050		HYD1	HYDRA1, C-8,7 sterol isomerase...		Potri.003G160500 [exp]	39.94	0.7508	HYD1.2
AT3G51740		IMK2	inflorescence meristem recepto...		Potri.006G104300 [exp]	45.60	0.8209	Pt-RHG1.3
AT2G17620		CYCB2;1	Cyclin B2;1 (.1)		Potri.005G100000 [exp]	59.02	0.8171	Pt-CYCMS1.1
AT5G08260		SCPL35	serine carboxypeptidase-like 3...		Potri.007G072300 [exp]	61.93	0.7026
AT1G67820			Protein phosphatase 2C family ...		Potri.010G047600 [exp]	64.14	0.8162
AT4G24710			P-loop containing nucleoside t...		Potri.012G086400 [exp]	67.30	0.7429
AT1G07420		SMO2-1, ATSMO1,...	Arabidopsis thaliana sterol 4-...		Potri.009G037400 [exp]	84.07	0.7326	Pt-SMO2.2
AT4G17000			unknown protein		Potri.001G287800 [exp]	84.85	0.8103

Compare expression of checked genes

Potri.008G062000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.