Plant FIBer expression Database

Potri.008G062100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G05930 323 / 6e-112 ATGC1 ARABIDOPSIS GUANYLYL CYCLASE 1, guanylyl cyclase 1 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009875
[exp]
364 / 7e-128 AT5G05930 319 / 4e-110 ARABIDOPSIS GUANYLYL CYCLASE 1, guanylyl cyclase 1 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0125 Peptidase_CA PF09778 Guanylate_cyc_2 Guanylylate cyclase
Representative CDS sequence
>Potri.008G062100.1 pacid=42806060 polypeptide=Potri.008G062100.1.p locus=Potri.008G062100 ID=Potri.008G062100.1.v4.1 annot-version=v4.1
ATGTGGCCATTGTATCTTCTATTAAACAAAATTCTTAATATACAAGATTTAGTAGTAGAAGAAGGAAAACCAGATGGTTTGGTTCAGCCATCGTCATCGT
CCAGCAGTAGAAAATGTGAAGATGCTGCTGCTGTCTTGCCCTGCTCACATTTTGTTCAAGTACCGCATATAAAGCAGCTTCACTCTTGGGATTGTGGCCT
TGCTTGTGTTTTGATGGCTTTGAATACAATTGGTATCAATAATTGCAGCATCCAGGGCTTGGCGGACTTATGCTGCACTAGTAGCATTTGGACGGTGGAT
CTGGCATATTTACTGCAGAAGTATTCTGTTAGTTTTTCCTTCTACACGGTAACACTTGGAGCAAATCCAAATTATTCAGTTGAGACATTTTACAAGGAAC
AATTGCCTGCAGATCTAGTTCGAGTGGATATGTTATTTCAAAAGGCACGAGGAGAAGGCATTAATATACAGTGCAGGTCGATCAATGAAACGGAAATTTC
TCTTTTCATATTGTCGGGGAAATATATTGCAATTGCATTGGTTAACCAGTACAAATTGAGTCACTCTTGGTTGGAGAATGCTATTCTACCAGGCTTAAAT
GGTGGCAACTCAGGCTATGCTGGTCATTACATTGTGATATGCGGCTATGATACTGGCACGGACGAGTTTGAGATTCGAGATCCTGCCGCTTCTAGAAAAC
ATGAGAGAATGTCGTCAAGATGCCTTGAAGAAGCACGGAAATCCTTTGGCACCGATGAAGATCTCCTTCTGATATCTCTGGAGAACGCGACAAGTGAAAG
AGCTCGTTAG
AA sequence
>Potri.008G062100.1 pacid=42806060 polypeptide=Potri.008G062100.1.p locus=Potri.008G062100 ID=Potri.008G062100.1.v4.1 annot-version=v4.1
MWPLYLLLNKILNIQDLVVEEGKPDGLVQPSSSSSSRKCEDAAAVLPCSHFVQVPHIKQLHSWDCGLACVLMALNTIGINNCSIQGLADLCCTSSIWTVD
LAYLLQKYSVSFSFYTVTLGANPNYSVETFYKEQLPADLVRVDMLFQKARGEGINIQCRSINETEISLFILSGKYIAIALVNQYKLSHSWLENAILPGLN
GGNSGYAGHYIVICGYDTGTDEFEIRDPAASRKHERMSSRCLEEARKSFGTDEDLLLISLENATSERAR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G05930 ATGC1 ARABIDOPSIS GUANYLYL CYCLASE 1... Potri.008G062100
[exp]
0 1
AT5G04270 DHHC-type zinc finger family p... Potri.010G226100
[exp]
3.16 0.6510
AT5G61060 HDA5, HDA05, AT... histone deacetylase 5 (.1.2) Potri.004G092900
[exp]
4.89 0.6488
AT3G61710 AtBECLIN1, ATAT... BECLIN1, AUTOPHAGY 6 (.1.2.3) Potri.002G170100
[exp]
6.70 0.6024
AT2G45500 AAA-type ATPase family protein... Potri.014G071900
[exp]
6.92 0.6281
AT3G27310 PUX1 plant UBX domain-containing pr... Potri.001G264500
[exp]
19.18 0.5957
AT2G40810 ATATG18C homolog of yeast autophagy 18C... Potri.019G062800
[exp]
21.79 0.5902
AT1G62710 BETAVPE, BETA-V... beta vacuolar processing enzym... Potri.001G119800
[exp]
22.04 0.5858
Potri.001G353250
[exp]
33.46 0.5472
AT4G39870 TLD-domain containing nucleola... Potri.007G092700
[exp]
37.66 0.5773
AT5G17165 unknown protein Potri.013G081700
[exp]
39.82 0.5894

Potri.008G062100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.