Plant FIBer expression Database

Potri.008G062200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G39870 91 / 4e-20 unknown protein
AT4G02830 57 / 3e-09 unknown protein
AT3G54000 54 / 1e-07 unknown protein
AT5G59050 53 / 2e-07 unknown protein
AT3G55690 52 / 2e-07 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G195800
[exp]
592 / 0 AT3G54000 94 / 3e-21 unknown protein
Potri.006G093000
[exp]
164 / 5e-46 AT3G54000 79 / 9e-16 unknown protein
Potri.016G105000
[exp]
159 / 3e-44 AT3G54000 73 / 4e-14 unknown protein
Potri.009G038600
[exp]
75 / 2e-14 AT5G59050 112 / 3e-28 unknown protein
Potri.005G208800
[exp]
59 / 7e-10 AT4G02830 99 / 4e-26 unknown protein
Potri.002G053700
[exp]
54 / 4e-08 AT4G02830 99 / 4e-26 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004675
[exp]
213 / 8e-66 AT2G39870 100 / 1e-23 unknown protein
Lus10040247
[exp]
212 / 3e-65 AT2G39870 100 / 9e-24 unknown protein
Lus10021105
[exp]
120 / 4e-30 AT3G54000 90 / 8e-20 unknown protein
Lus10014664
[exp]
65 / 9e-12 AT4G02830 74 / 2e-16 unknown protein
Lus10042573
[exp]
61 / 2e-10 AT4G02830 66 / 2e-13 unknown protein
Lus10017206
[exp]
47 / 2e-05 AT3G54000 59 / 9e-10 unknown protein
Lus10001433
[exp]
47 / 2e-05 AT5G59050 80 / 9e-17 unknown protein
Lus10001626
[exp]
46 / 3e-05 AT5G59050 77 / 4e-16 unknown protein
PFAM info
Representative CDS sequence
>Potri.008G062200.1 pacid=42806029 polypeptide=Potri.008G062200.1.p locus=Potri.008G062200 ID=Potri.008G062200.1.v4.1 annot-version=v4.1
ATGGCCGAGGCTCCTGAAGACGTTGTATCTTGGCTTCCTACTAAGGAAAAGTTACTCATGGACAAAGAGAACTTCAACAAAATTTGTTTCAACACTGAGT
TGAAACCTAGCCTGAGCTTCTTTTCCGAGTTCCCTTACGAGTTTGACTCTCTCGGCTCGCCTTCCGCTCTCAGCTCCCCTGTAGAGTCCAGTATGGGTTC
CTCCACCGAGACAGAGAGCAGCGACGAGGACGACTTTCTCGCTGGGTTAACTCGGCGTCTTACTCAGCAACTCGCTGTCAAACCCGAGAAGTGGGTCATG
GCCGGGTCACCGGAATCGACACTGAGTGGACTCAGAAGCTGGTCAGTTTCTAGCAACGGGAGTCCAAACGGGGTGTTGTCGCCGCCAACGACGCCGTTTG
GTGCCAAGAATGACACGTGGGATCTGATATATGCAGCTGCTGGTGAAGTTGCAAGGTTGAAGATGAGCAATAATGAGGGCCATAAGTACAATAGTAGTAC
TAACTATCAAAGGAGTGGTTTACTGGGTCCAGCTAGGACTCAGAATCCAGGTCTCACTTCAGTCAAGAATCAGCATGCTGGGTTTTATCCTAGCCATTGT
AGCTCTACTTTTGGCCATAATACTTCACAAGTTAATCAGTGCCAGCAACTTGTGAGGCAAGAGCAACAGGCACTAAAGCAACAGTGCTCCTCAATTTGGG
AAAGGCAACAAGTGAAGACAAGCTGGCAAGCTCAGCCCCGACACCACCACCACAGCCACCACCACCAGATCCAGAGCAGAGGCACAAGTGCCGGGAATGA
AAATGGGAGGTTTGTGCGTTCTCTCGGTCTGCCTCAATCTGCTTGGCCTCCCCTTCAAGTACACGCACAAAATCAACACTCTAACTCAGCAGGCACGAGG
GCTGTTTTTCCAGGTGGATCTGGTGTTAAGAGAGAGTGTGCTGGCACTGGTGTTTTTTTGCCTCGTAGATATAGCAACCCCCCTGAACCCAAGAAAAAAT
CTGCAGGTTGCCCAGCAGTTCTGTTCCCAGCTAAAGTTGTTCAGGCCCTAAATCTGAACTTTGACGACATGGATTTCAACGGCCTCGCTCAGCCACGGCT
CAACAGTAATGCTGCTTTTCCCTCTGATTATGATGCTTTGATGATAAGAAGAAGTGCACTCGTGGCACAGCAGAAGCGAAATTTACGGCAAGAGAGTGTG
CTCAATCATGAAATACGGCTGCCTCAAGAGTGGACATACTGA
AA sequence
>Potri.008G062200.1 pacid=42806029 polypeptide=Potri.008G062200.1.p locus=Potri.008G062200 ID=Potri.008G062200.1.v4.1 annot-version=v4.1
MAEAPEDVVSWLPTKEKLLMDKENFNKICFNTELKPSLSFFSEFPYEFDSLGSPSALSSPVESSMGSSTETESSDEDDFLAGLTRRLTQQLAVKPEKWVM
AGSPESTLSGLRSWSVSSNGSPNGVLSPPTTPFGAKNDTWDLIYAAAGEVARLKMSNNEGHKYNSSTNYQRSGLLGPARTQNPGLTSVKNQHAGFYPSHC
SSTFGHNTSQVNQCQQLVRQEQQALKQQCSSIWERQQVKTSWQAQPRHHHHSHHHQIQSRGTSAGNENGRFVRSLGLPQSAWPPLQVHAQNQHSNSAGTR
AVFPGGSGVKRECAGTGVFLPRRYSNPPEPKKKSAGCPAVLFPAKVVQALNLNFDDMDFNGLAQPRLNSNAAFPSDYDALMIRRSALVAQQKRNLRQESV
LNHEIRLPQEWTY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G39870 unknown protein Potri.008G062200
[exp]
0 1
AT5G16850 ATTERT telomerase reverse transcripta... Potri.003G022600
[exp]
9.48 0.7508
AT3G06340 DNAJ heat shock N-terminal dom... Potri.008G196201
[exp]
10.53 0.6947
AT5G18930 BUD2, SAMDC4 BUSHY AND DWARF 2, Adenosylmet... Potri.010G028500
[exp]
16.97 0.7418
AT5G01420 Glutaredoxin family protein (.... Potri.010G243700
[exp]
28.30 0.7457
AT5G23630 PDR2, MIA PI DEFICIENCY RESPONSE 2, MALE... Potri.004G137100
[exp]
38.98 0.7167
AT4G27640 ARM repeat superfamily protein... Potri.008G085800
[exp]
50.64 0.7049
Potri.001G360550
[exp]
61.96 0.6976
AT4G03390 SRF3 STRUBBELIG-receptor family 3 (... Potri.011G045600
[exp]
63.38 0.6742
AT1G02550 Plant invertase/pectin methyle... Potri.002G194800
[exp]
63.79 0.6756
AT1G27090 glycine-rich protein (.1) Potri.008G194200
[exp]
66.24 0.6584

Potri.008G062200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.