Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22380 344 / 7e-114 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G22360 339 / 6e-112 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G22400 339 / 7e-112 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G22370 332 / 3e-109 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT1G22340 326 / 8e-107 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT1G78270 315 / 1e-102 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT3G46660 256 / 3e-80 UGT76E12 UDP-glucosyl transferase 76E12 (.1) AT3G46670 247 / 9e-77 UGT76E11 UDP-glucosyl transferase 76E11 (.1) AT3G11340 245 / 6e-76 UGT76B1 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) AT5G05870 234 / 2e-71 UGT76C1 UDP-glucosyl transferase 76C1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G105300 [exp] 487 / 9e-170 AT1G22380 327 / 8e-107 UDP-glucosyl transferase 85A3 (.1) Potri.016G105400 [exp] 487 / 1e-169 AT1G22380 324 / 6e-106 UDP-glucosyl transferase 85A3 (.1) Potri.002G098400 [exp] 344 / 1e-113 AT1G22360 640 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.001G313000 [exp] 332 / 4e-109 AT1G22360 564 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.016G021000 [exp] 327 / 5e-107 AT1G22360 561 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052166 [exp] 325 / 3e-106 AT1G22360 607 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.006G023600 [exp] 324 / 4e-106 AT1G22380 526 / 0.0 UDP-glucosyl transferase 85A3 (.1) Potri.007G095000 [exp] 324 / 5e-106 AT1G22340 543 / 0.0 UDP-glucosyl transferase 85A7 (.1) Potri.002G098300 [exp] 324 / 7e-106 AT1G22360 602 / 0.0 UDP-glucosyl transferase 85A2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014831 [exp] 575 / 0 AT1G22380 296 / 5e-95 UDP-glucosyl transferase 85A3 (.1) Lus10009876 [exp] 571 / 0 AT1G22380 295 / 2e-94 UDP-glucosyl transferase 85A3 (.1) Lus10004670 [exp] 542 / 0 AT1G22340 313 / 1e-101 UDP-glucosyl transferase 85A7 (.1) Lus10017201 [exp] 439 / 5e-151 AT1G22380 337 / 4e-111 UDP-glucosyl transferase 85A3 (.1) Lus10031388 [exp] 350 / 3e-116 AT1G22400 644 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10010665 [exp] 326 / 1e-106 AT1G22400 516 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10032220 [exp] 323 / 2e-105 AT1G22380 601 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10032218 [exp] 320 / 3e-104 AT1G22380 564 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10024583 [exp] 319 / 6e-104 AT1G22380 598 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10013925 [exp] 318 / 1e-103 AT1G22380 560 / 0.0 UDP-glucosyl transferase 85A3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.008G062400.1 pacid=42807240 polypeptide=Potri.008G062400.1.p locus=Potri.008G062400 ID=Potri.008G062400.1.v4.1 annot-version=v4.1 ATGGAAAACAGGTCGAATCCTCCCCCTCATGTCCTAATCTTTCCTCTCCCTTGCCAAGGCCATGTCAACTCCATGCTCAAGCTAGCCGAGCTTCTAAGTC TCGCCGGAATTAACATTACCTTCCTAAATTCCGAGCACAACCATGAGCTTCTAGCCCGTTATACGAATATTGAAGATCGTTTTACGAAATATCCTGGGTT CCAATTCCAGACCATAGCTGATGGCCTGCCTGTAGATCACCCGCGCTCAGGTGGCAAGCTCATGGAGCTTTTTGAAGCGATGAAGTTGGTTACAAAGCCA GTCTTTAAAAAGATTTTGCTTGAGACTAAGCCGCCAGTTAACTGTATTATAGGAGATGGGATTCTTGGATTTGTTGGTGATGTTGCCATTGAGGTTGGAG TTCCTTTTATTTATTTTCGTACCGTTAGTGCCTGTTCCTTCTGGGCTTATTTTTCGATTTTTGACATCATTGAAGGTGGTCAACTTCCCATCAGAGGAAA TGAAGATATGGACCGTCTCATAACCAAAGTACCGGGGATGGAAACTTTTCTCAGGTGCCGAGATCTCCCTAGTTTTTGCCGAGTCAGTGACATGACACAC CCGAATCTCTTACTGGTCATGAATGAGACACGACAGTCCCCTCGAGCAAAAGCACTCATACTCAACACATTCGAAGACCTTGAAGGGCCACTAATGTCTC AAATCCGAACTCATTGCCCCGAGATCTACAGCATTGGACCTCTCCACGAGCACTTACAAGCAAAGCTCAGCGCGAAGAACGAAAAATCGTGTCAATCCTC CAACAGTCTGAGGGAAATTGACAGGAGCTGTATGACATGGCTAGATAATCAACCTGAGAAATCAGTGCTCTATGTTAGCTTTGGCAGCTTCACAGTGATG ACTAGACACCAGTTGTTGGAGTTCTGGTATGGTCTTGTTAGTAGCAAGAAGCGGTTCTTGTGGGTTATAAGACCTGATTCTATTGCCACGAAAGATGGTG AATTTGAAAAAATTCCTGTGGAGGTTGAGGAGGGGACTAAGGAAAGAGGGTTTATTGCGGGGTGGGTGCCACAAGAGGAGGTTTTGGCACACAAGGCAAT TGCTGGGTTTTTGACACACAGTGGATGGAACTCAACTTTGGAGAGTATAGTGGCTGGAGTGCCTATGATTTGCTGGCCTTATTTTGCTGACCAGCAGGTG AATAGTAGGTTTGTGGGTGAAGTCTGGAAGCTAGGGTTGGACATGAAGGACCAGTGCGATAGAGAGATCGTTGAAAAGATGGTGAATGACCTGATGGTGG AGAGGAGGGAGGAGTTTGTGAGATCGGCGACTAGGATGGCAGAGTTGTCTAGAAAGAGTGTCAGAGAAGGTGGGTCCTCTTATTGTAATCTGAACCGTTT GATTGAGGATATAAGGACGATGAGTGTGCGAGTACATGATATCTGA
AA sequence Show only first row Show all	>Potri.008G062400.1 pacid=42807240 polypeptide=Potri.008G062400.1.p locus=Potri.008G062400 ID=Potri.008G062400.1.v4.1 annot-version=v4.1 MENRSNPPPHVLIFPLPCQGHVNSMLKLAELLSLAGINITFLNSEHNHELLARYTNIEDRFTKYPGFQFQTIADGLPVDHPRSGGKLMELFEAMKLVTKP VFKKILLETKPPVNCIIGDGILGFVGDVAIEVGVPFIYFRTVSACSFWAYFSIFDIIEGGQLPIRGNEDMDRLITKVPGMETFLRCRDLPSFCRVSDMTH PNLLLVMNETRQSPRAKALILNTFEDLEGPLMSQIRTHCPEIYSIGPLHEHLQAKLSAKNEKSCQSSNSLREIDRSCMTWLDNQPEKSVLYVSFGSFTVM TRHQLLEFWYGLVSSKKRFLWVIRPDSIATKDGEFEKIPVEVEEGTKERGFIAGWVPQEEVLAHKAIAGFLTHSGWNSTLESIVAGVPMICWPYFADQQV NSRFVGEVWKLGLDMKDQCDREIVEKMVNDLMVERREEFVRSATRMAELSRKSVREGGSSYCNLNRLIEDIRTMSVRVHDI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Potri.008G062400 [exp]	0	1
AT4G16447			unknown protein		Potri.016G009200 [exp]	1.00	0.9150
AT1G07670		ATECA4	endomembrane-type CA-ATPase 4 ...		Potri.005G147900 [exp]	3.87	0.8928
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Potri.010G078300 [exp]	4.24	0.8913	Pt-IAA14.2
AT3G47600	MYB	ATMYB94, AtMYBC...	myb domain protein 94 (.1)		Potri.017G082500 [exp]	6.00	0.8999	Pt-MYB94.1
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Potri.018G111900 [exp]	11.87	0.8958
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Potri.006G203500 [exp]	12.04	0.8662
AT3G48200			unknown protein		Potri.015G079000 [exp]	12.32	0.8951
AT1G11340			S-locus lectin protein kinase ...		Potri.004G028701 [exp]	13.67	0.8798
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Potri.013G022100 [exp]	16.73	0.8899
					Potri.010G226200 [exp]	20.78	0.8293

Compare expression of checked genes

Potri.008G062400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.