Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05840 615 / 0 Protein of unknown function (DUF620) (.1) AT3G55720 478 / 1e-167 Protein of unknown function (DUF620) (.1) AT5G66740 436 / 3e-152 Protein of unknown function (DUF620) (.1) AT1G75160 408 / 6e-141 Protein of unknown function (DUF620) (.1) AT1G49840 387 / 3e-131 Protein of unknown function (DUF620) (.1) AT3G19540 379 / 3e-128 Protein of unknown function (DUF620) (.1) AT1G27690 356 / 7e-120 Protein of unknown function (DUF620) (.1) AT1G79420 315 / 5e-104 Protein of unknown function (DUF620) (.1) AT5G06610 263 / 2e-84 Protein of unknown function (DUF620) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G195200 [exp] 798 / 0 AT5G05840 600 / 0.0 Protein of unknown function (DUF620) (.1) Potri.002G262400 [exp] 468 / 9e-165 AT1G75160 541 / 0.0 Protein of unknown function (DUF620) (.1) Potri.014G181500 [exp] 456 / 5e-160 AT1G75160 533 / 0.0 Protein of unknown function (DUF620) (.1) Potri.007G027800 [exp] 431 / 3e-150 AT5G66740 645 / 0.0 Protein of unknown function (DUF620) (.1) Potri.014G019900 [exp] 395 / 1e-134 AT3G19540 583 / 0.0 Protein of unknown function (DUF620) (.1) Potri.001G297500 [exp] 393 / 9e-134 AT3G19540 665 / 0.0 Protein of unknown function (DUF620) (.1) Potri.009G092400 [exp] 380 / 8e-129 AT3G19540 644 / 0.0 Protein of unknown function (DUF620) (.1) Potri.010G174200 [exp] 338 / 7e-114 AT1G79420 524 / 0.0 Protein of unknown function (DUF620) (.1) Potri.008G081700 [exp] 338 / 1e-113 AT1G79420 522 / 0.0 Protein of unknown function (DUF620) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004669 [exp] 634 / 0 AT5G05840 558 / 0.0 Protein of unknown function (DUF620) (.1) Lus10040241 [exp] 625 / 0 AT5G05840 551 / 0.0 Protein of unknown function (DUF620) (.1) Lus10026031 [exp] 425 / 8e-148 AT5G66740 643 / 0.0 Protein of unknown function (DUF620) (.1) Lus10014323 [exp] 434 / 6e-145 AT5G66740 650 / 0.0 Protein of unknown function (DUF620) (.1) Lus10010811 [exp] 398 / 4e-137 AT1G75160 484 / 9e-172 Protein of unknown function (DUF620) (.1) Lus10007157 [exp] 390 / 7e-134 AT1G75160 477 / 6e-169 Protein of unknown function (DUF620) (.1) Lus10024790 [exp] 389 / 2e-132 AT3G19540 630 / 0.0 Protein of unknown function (DUF620) (.1) Lus10013891 [exp] 378 / 4e-128 AT3G19540 674 / 0.0 Protein of unknown function (DUF620) (.1) Lus10018707 [exp] 340 / 4e-113 AT3G19540 566 / 0.0 Protein of unknown function (DUF620) (.1) Lus10026605 [exp] 283 / 4e-94 AT3G19540 405 / 2e-141 Protein of unknown function (DUF620) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04788 [poplar] [flax] DUF620 Protein of unknown function (DUF620)
Representative CDS sequence Show only first row Show all	>Potri.008G062500.1 pacid=42807381 polypeptide=Potri.008G062500.1.p locus=Potri.008G062500 ID=Potri.008G062500.1.v4.1 annot-version=v4.1 ATGAGGAAACTTTGTCCAAATTTTGATCGTGAAGATGGGCTCGAGACAGTTCTCGAGGTTCCAATCCCTGAAGAAATGTTTGCTTCAAACAAGCATAGTA ATAGGTCATGGCAAAACATGAAAGCCTGGATGAGGCCACACAGCGAAAGGTCCATGACAACTCTTTTTGGAGGCAAAAACACTGAGATTCAACTCTTGCT TGGTGTTGTTGGTGCTCCTTTGATCCCTCTTCAAATCCGTTGTGATCACCAGCTCATCAACTGTAACATCAAAGACCAGCCTATTGAGGCATCCATGGCA AAATACATAGTGCAACAATACATAGCAGCAGTGGGAGGAGAGAGGGCTCTGAATTCTGTGGACAGCATGTATGCCATGGGGAAAGTTAAAATGGAAGCAT CAGAATTTTGTGCAGGTGAAGGGAGCTTGAACAGCAATAAGGTGCTGAGAGTGAAGAATCAGAATCATGGAGGTGGAGAAATGGGAGGGTTTGTTCTATG GCAAAAAAGGCCTGATTTGTGGTGCTTGGAATTAGTGGTCTCTGGGTGCAAAATTAGTGCTGGCAGCGACGGTAAGGTTGCTTGGAGGCAAACCCCATGG CACCACTCTCATGCATCTAGAGGCCCACCTAGGCCTCTCAGACGTTTTCTCCAGGGTCTTGATCCAAAGTCCACAGCCAACTTATTCTCCAATTCTGTTT GCACTGGCGAGAAAGCAATCAACAATGAAGACTGTTTCGTGCTAAAACTTGAAGCTGAGCCCTCGTCACTAAGAGCAAGAAGCAGTAGCAATGTAGAAAT AATTAGACACACATTATGGGGCTACTTCAGCCAACGAACGGGTCTGTTGGTCCAATTAGAAGACTCTCACCTTCTAAGGATTAAAGCTTCAGGCAATGAC AGCATATTTTGGGAGACCACAATGGAGTCAACAATTCAAGACTACCGAACCATAGATGGGATTAACATAGCATATAAGGGTAGGACTTCGGTCTCATTGT TCAGGTTCGGTGAGACCTCAGAGAGTCATTCAAGGACAAGAATGGAGGAAGTTTGGGCTATTGAAGAAGTTGATTTTAACATTAAGGGATTGTCCATGGA TTGCTTTTTGCCACCCAGTGACATAAAGAAAGAGGAAGAAGGTTGTGATAATGTTGTGATTAGCAATAATGCAAGATTACCATTCAAGATTCGATCAGCG TCTTCTAGGATTAATGCATCTAAGGTTGTTGCTGTCGACGACGTTCATGACTCAGATGAAAATGAAGATGAGGATGACCAACAGTAG
AA sequence Show only first row Show all	>Potri.008G062500.1 pacid=42807381 polypeptide=Potri.008G062500.1.p locus=Potri.008G062500 ID=Potri.008G062500.1.v4.1 annot-version=v4.1 MRKLCPNFDREDGLETVLEVPIPEEMFASNKHSNRSWQNMKAWMRPHSERSMTTLFGGKNTEIQLLLGVVGAPLIPLQIRCDHQLINCNIKDQPIEASMA KYIVQQYIAAVGGERALNSVDSMYAMGKVKMEASEFCAGEGSLNSNKVLRVKNQNHGGGEMGGFVLWQKRPDLWCLELVVSGCKISAGSDGKVAWRQTPW HHSHASRGPPRPLRRFLQGLDPKSTANLFSNSVCTGEKAINNEDCFVLKLEAEPSSLRARSSSNVEIIRHTLWGYFSQRTGLLVQLEDSHLLRIKASGND SIFWETTMESTIQDYRTIDGINIAYKGRTSVSLFRFGETSESHSRTRMEEVWAIEEVDFNIKGLSMDCFLPPSDIKKEEEGCDNVVISNNARLPFKIRSA SSRINASKVVAVDDVHDSDENEDEDDQQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05840			Protein of unknown function (D...		Potri.008G062500 [exp]	0	1
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Potri.017G018600 [exp]	3.46	0.8026
AT3G02885		GASA5	GAST1 protein homolog 5 (.1)		Potri.017G124200 [exp]	5.65	0.8385	Pt-GASA5.2
AT1G75800			Pathogenesis-related thaumatin...		Potri.004G014351 [exp]	9.16	0.7875
AT2G26695			Ran BP2/NZF zinc finger-like s...		Potri.018G066900 [exp]	11.22	0.8165
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.018G120700 [exp]	11.48	0.8153
AT4G03620			myosin heavy chain-related (.1...		Potri.011G091700 [exp]	15.16	0.7945
AT2G43890			Pectin lyase-like superfamily ...		Potri.007G145300 [exp]	17.32	0.7791
AT5G05340			Peroxidase superfamily protein...		Potri.013G083600 [exp]	17.43	0.7989
AT1G21695			hydroxyproline-rich glycoprote...		Potri.005G181200 [exp]	18.33	0.7991
AT2G41810			Protein of unknown function, D...		Potri.006G050400 [exp]	20.34	0.7982

Compare expression of checked genes

Potri.008G062500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.