Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05830 211 / 7e-70 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G37950 139 / 2e-41 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G01070 138 / 5e-41 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT5G59000 127 / 1e-36 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G34200 78 / 9e-18 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G60580 63 / 2e-11 RING/U-box superfamily protein (.1.2.3.4) AT2G45530 59 / 2e-10 RING/U-box superfamily protein (.1) AT5G03180 59 / 3e-10 RING/U-box superfamily protein (.1.2) AT3G09760 58 / 7e-10 RING/U-box superfamily protein (.1) AT3G06330 56 / 3e-09 RING/U-box superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G195100 [exp] 272 / 7e-94 AT5G05830 206 / 9e-68 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.006G094000 [exp] 211 / 2e-69 AT5G05830 192 / 8e-62 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.016G105900 [exp] 206 / 3e-67 AT5G05830 191 / 2e-61 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.009G039700 [exp] 163 / 4e-51 AT5G05830 159 / 2e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.001G246700 [exp] 156 / 2e-48 AT5G59000 159 / 2e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.004G059200 [exp] 106 / 3e-27 AT5G05830 107 / 3e-27 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.011G068800 [exp] 102 / 8e-26 AT5G05830 91 / 4e-21 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.016G022900 [exp] 66 / 1e-12 AT5G60580 337 / 7e-111 RING/U-box superfamily protein (.1.2.3.4) Potri.006G024000 [exp] 65 / 3e-12 AT5G60580 361 / 4e-120 RING/U-box superfamily protein (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040240 [exp] 187 / 6e-60 AT5G05830 187 / 4e-60 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10028249 [exp] 185 / 4e-59 AT5G05830 184 / 8e-59 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10017197 [exp] 180 / 7e-57 AT5G05830 182 / 1e-57 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10021113 [exp] 176 / 4e-56 AT5G05830 167 / 7e-53 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10027744 [exp] 164 / 2e-50 AT5G05830 162 / 8e-50 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10035549 [exp] 160 / 3e-49 AT5G05830 157 / 4e-48 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10016451 [exp] 148 / 4e-45 AT5G05830 164 / 1e-51 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10040716 [exp] 146 / 3e-44 AT5G05830 159 / 1e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10015273 [exp] 116 / 2e-31 AT2G34200 106 / 3e-27 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10007293 [exp] 106 / 4e-28 AT2G34200 103 / 6e-27 RING/FYVE/PHD zinc finger superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF12906 [poplar] [flax] RINGv RING-variant domain
Representative CDS sequence Show only first row Show all	>Potri.008G062600.1 pacid=42805730 polypeptide=Potri.008G062600.1.p locus=Potri.008G062600 ID=Potri.008G062600.1.v4.1 annot-version=v4.1 ATGGAAAACTTGCAAAAAACCCAAGCTGTTGTTGTTGTTACTGGTGGTGATGATGTTGATGTTGATGCAGTAGATGGAAGTAGTCACCCCAACAACAAGC AGTCAGTGGGTGAAGAGCATATAGGTTCTTCAAGTGAGTCTGGCTCTTGCAGTGAGATTGTGAAGGAGAGATCTTCTGTGTCAGTTGTGGATCTGGAGTG TGGGGCACCAGAGATAAAGCTACATTTGGCTAAAGTTGAGAGGGACTGCAGGATTTGTCATTTGACCATGGACGCAGGGAATCTGGAGTCTGGAGTGCCT TTTGAGTTGGGGTGTTCTTGCAAAGATGATTTGGCTGCTGCTCATAAGCAGTGTGCAGAGGCCTGGTTCAAGATAAAGGGAAACAAAACCTGTGAGATTT GTGGATCAGTTGCACGAAATGTAACTGGTGCGAATGAAACTGAGTTGGCAGAGCAGTGGAACCAGGCCACTGATGGTGCCATGGCAACCACAACTGGGCC TGTGCAGCCTGCAGAGACCCGAAACTTCTGGCAGGGTCACCAGTTCTTGAATTTCCTCCTAGCATGTATGATCTTTGCCTTTGTCATCTCCTGGCTCTTT CACTTCAATGTACCCTCTTAA
AA sequence Show only first row Show all	>Potri.008G062600.1 pacid=42805730 polypeptide=Potri.008G062600.1.p locus=Potri.008G062600 ID=Potri.008G062600.1.v4.1 annot-version=v4.1 MENLQKTQAVVVVTGGDDVDVDAVDGSSHPNNKQSVGEEHIGSSSESGSCSEIVKERSSVSVVDLECGAPEIKLHLAKVERDCRICHLTMDAGNLESGVP FELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGSVARNVTGANETELAEQWNQATDGAMATTTGPVQPAETRNFWQGHQFLNFLLACMIFAFVISWLF HFNVPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05830			RING/FYVE/PHD zinc finger supe...		Potri.008G062600 [exp]	0	1
AT2G22600			RNA-binding KH domain-containi...		Potri.007G012000 [exp]	1.73	0.8508
AT1G71900			Protein of unknown function (D...		Potri.013G114100 [exp]	8.00	0.8467
AT3G50860			Clathrin adaptor complex small...		Potri.007G025400 [exp]	9.32	0.8381
AT5G22400			Rho GTPase activating protein ...		Potri.009G162900 [exp]	19.20	0.8150
AT5G62880		ARAC10, ATRAC10...	RHO-RELATED PROTEIN FROM PLANT...		Potri.012G077800 [exp]	21.21	0.8114
AT5G67130			PLC-like phosphodiesterases su...		Potri.005G140100 [exp]	22.58	0.8004
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Potri.006G249200 [exp]	23.66	0.7771
AT4G39740		HCC2	homologue of copper chaperone ...		Potri.007G091300 [exp]	26.72	0.7795
AT2G33793			unknown protein		Potri.011G051900 [exp]	29.84	0.8092
AT2G24765		ARF3, ARL1, ATA...	ARF-LIKE 1, ADP-ribosylation f...		Potri.018G096077 [exp]	30.49	0.8203

Compare expression of checked genes

Potri.008G062600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.