Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SYP81.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51740 409 / 2e-144 ATSYP81, SYP81, ATUFE1 ORTHOLOG OF YEAST UFE1 \(UNKNOWN FUNCTION-ESSENTIAL 1\), ARABIDOPSIS THALIANA ORTHOLOG OF YEAST UFE1 \(UNKNOWN FUNCTION-ESSENTIAL 1\), syntaxin of plants 81 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G194300 [exp] 550 / 0 AT1G51740 424 / 1e-150 ORTHOLOG OF YEAST UFE1 \(UNKNOWN FUNCTION-ESSENTIAL 1\), ARABIDOPSIS THALIANA ORTHOLOG OF YEAST UFE1 \(UNKNOWN FUNCTION-ESSENTIAL 1\), syntaxin of plants 81 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040237 [exp] 471 / 4e-167 AT1G51740 439 / 2e-154 ORTHOLOG OF YEAST UFE1 \(UNKNOWN FUNCTION-ESSENTIAL 1\), ARABIDOPSIS THALIANA ORTHOLOG OF YEAST UFE1 \(UNKNOWN FUNCTION-ESSENTIAL 1\), syntaxin of plants 81 (.1) Lus10028252 [exp] 408 / 2e-144 AT1G51740 382 / 3e-134 ORTHOLOG OF YEAST UFE1 \(UNKNOWN FUNCTION-ESSENTIAL 1\), ARABIDOPSIS THALIANA ORTHOLOG OF YEAST UFE1 \(UNKNOWN FUNCTION-ESSENTIAL 1\), syntaxin of plants 81 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10496 [poplar] [flax] Syntaxin-18_N SNARE-complex protein Syntaxin-18 N-terminus
Representative CDS sequence Show only first row Show all	>Potri.008G063100.1 pacid=42806982 polypeptide=Potri.008G063100.1.p locus=Potri.008G063100 ID=Potri.008G063100.1.v4.1 annot-version=v4.1 ATGGCGAAAATTAGAGATAGAACAGAGGATTTTAAAGATGCAGTGAGGCACATTGCTATATCTTTAGGTTACAATGAGACCAGATTGACAGCTATTATGG CGTCTTTTATTATTCATAAACCACGGCAAAGATCACCGTTTACTAGAGCTGCTCTTAAAACGCTTGAAAGCATTGGAGCATTAGAACAATTTATGTTGAA GCATAGGAAGGATTATGTTGATCTGCATCGTACCACTGAACAGGAGAGGGATAGTATTGAACAAGAGGTTACTGCATTTATTAAAGCATGCAAAGAACAA ATTGATATTCTCAAGAATAGCATAAACGATGAAGCAGCAAACACAAAGGGGTGGCTTGGCATCAAGGCTGATACCTCCACCACTGATACTATAGCACACA AACATGGGGTGGTTTTGATTTTAAGTGAGAAACTTCATTCTGTCACTGCACGGTTTGATCAGCTAAGAGCTATACGCTTCCAAGATGCTATTAATAAGAG GATACCAAGAAGAAAACTTAACCGGGCTGCAAATACAAATACAACTACTGTTGATTCCTCTAAAACAAACAATTTAGAGTTCAGTGAACCTGATGACATT CAGCCAGAGTCTCTTAGAGTGCAGCAGCAAGTGTTGGATGATGAGACTCGTGCCCTGCAGGTGGAATTGACTAGTCTTCTAGAAGCAGTTCAAGAAACCG AAACTAAGATGCTGGAAATGTCTGCATTGAATCACCTAATGTCAACGCATGTTCTGCAACAAGCACAACAAATAGAGCTTCTGTATGAGCAGGCAGTTGA AGCTACAAAGAACGTAGAGCTTGGAAACAAAGAGTTGTCTCAGGCAATACAGCGGAATAGCAGTAGCAGGACTTTTCTCTTGCTTTTCCTTTTTGTTCTT ACTTTTTCAATCCTCTTTCTGGATTGGTATAGTTGA
AA sequence Show only first row Show all	>Potri.008G063100.1 pacid=42806982 polypeptide=Potri.008G063100.1.p locus=Potri.008G063100 ID=Potri.008G063100.1.v4.1 annot-version=v4.1 MAKIRDRTEDFKDAVRHIAISLGYNETRLTAIMASFIIHKPRQRSPFTRAALKTLESIGALEQFMLKHRKDYVDLHRTTEQERDSIEQEVTAFIKACKEQ IDILKNSINDEAANTKGWLGIKADTSTTDTIAHKHGVVLILSEKLHSVTARFDQLRAIRFQDAINKRIPRRKLNRAANTNTTTVDSSKTNNLEFSEPDDI QPESLRVQQQVLDDETRALQVELTSLLEAVQETETKMLEMSALNHLMSTHVLQQAQQIELLYEQAVEATKNVELGNKELSQAIQRNSSSRTFLLLFLFVL TFSILFLDWYS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G51740		ATSYP81, SYP81,...	ORTHOLOG OF YEAST UFE1 \(UNKNO...		Potri.008G063100 [exp]	0	1	SYP81.1
AT1G80410		OMA, EMB2753	OMISHA, EMBRYO DEFECTIVE 2753,...		Potri.001G177700 [exp]	2.44	0.8962
AT1G16170			unknown protein		Potri.001G040300 [exp]	5.91	0.9042
AT5G26830			Threonyl-tRNA synthetase (.1)		Potri.010G096500 [exp]	7.21	0.8968	Pt-THRRS.2
AT1G71840			transducin family protein / WD...		Potri.013G116900 [exp]	12.04	0.8892
AT1G10417			unknown protein		Potri.008G190600 [exp]	12.32	0.8875
AT1G10180			unknown protein		Potri.015G119300 [exp]	12.40	0.8778
AT5G15080			Protein kinase superfamily pro...		Potri.004G129000 [exp]	13.41	0.8886
AT1G12360		KEU	keule, Sec1/munc18-like (SM) p...		Potri.001G116900 [exp]	13.60	0.8562	Pt-KEU.2
AT4G30920		AtLAP2, LAP2	leucyl aminopeptidase 2, Cytos...		Potri.006G184500 [exp]	13.85	0.8950
AT1G08560		KN, ATSYP111, S...	KNOLLE, syntaxin of plants 11...		Potri.019G030800 [exp]	14.24	0.8615	SYP111.2

Compare expression of checked genes

Potri.008G063100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.