Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07070 216 / 2e-74 Ribosomal protein L35Ae family protein (.1) AT1G74270 216 / 2e-74 Ribosomal protein L35Ae family protein (.1) AT1G41880 212 / 5e-73 Ribosomal protein L35Ae family protein (.1) AT3G55750 211 / 8e-73 Ribosomal protein L35Ae family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G199400 [exp] 226 / 1e-78 AT1G07070 214 / 1e-73 Ribosomal protein L35Ae family protein (.1) Potri.010G194200 [exp] 225 / 5e-78 AT1G07070 219 / 8e-76 Ribosomal protein L35Ae family protein (.1) Potri.008G059400 [exp] 224 / 8e-78 AT1G74270 216 / 1e-74 Ribosomal protein L35Ae family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035539 [exp] 213 / 3e-73 AT1G74270 215 / 4e-74 Ribosomal protein L35Ae family protein (.1) Lus10028254 [exp] 210 / 5e-72 AT1G41880 207 / 3e-71 Ribosomal protein L35Ae family protein (.1) Lus10040235 [exp] 209 / 2e-71 AT1G41880 207 / 7e-71 Ribosomal protein L35Ae family protein (.1) Lus10021121 [exp] 197 / 4e-66 AT1G07070 197 / 6e-66 Ribosomal protein L35Ae family protein (.1) Lus10027754 [exp] 193 / 9e-65 AT1G74270 196 / 7e-66 Ribosomal protein L35Ae family protein (.1) Lus10017188 [exp] 162 / 1e-47 AT2G38010 1100 / 0.0 Neutral/alkaline non-lysosomal ceramidase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0575 [poplar] [flax] EFTPs PF01247 [poplar] [flax] Ribosomal_L35Ae Ribosomal protein L35Ae
Representative CDS sequence Show only first row Show all	>Potri.008G063200.1 pacid=42805949 polypeptide=Potri.008G063200.1.p locus=Potri.008G063200 ID=Potri.008G063200.1.v4.1 annot-version=v4.1 ATGGTGAAGGGACGCCAAGGAGAGCGAGTCAGGCTTTATGTACGGGGAACAGTCTTGGGTTATAAGAGGTCGAAGTCCAACCAATATCCCAACACATCAC TGATCCAGATTGAGGGCGTCAACACAAAAGAAGAGGTTGCATGGTATGCTGGGAAGCGGATGGCATACATCTACAAGGCCAAGGTGAAAAGGGATGGATC CCATTATCGCTGCATTTGGGGCAAGGTCACTAGGCCCCATGGTAACAGCGGTGTAGTGAGAGCCAAGTTCAAATCCAATCTGCCTCCAAAGTCAATGGGA GCTCGAGTGCGGGTTTTCATGTATCCCAGCAATATCTGA
AA sequence Show only first row Show all	>Potri.008G063200.1 pacid=42805949 polypeptide=Potri.008G063200.1.p locus=Potri.008G063200 ID=Potri.008G063200.1.v4.1 annot-version=v4.1 MVKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLIQIEGVNTKEEVAWYAGKRMAYIYKAKVKRDGSHYRCIWGKVTRPHGNSGVVRAKFKSNLPPKSMG ARVRVFMYPSNI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07070			Ribosomal protein L35Ae family...		Potri.008G063200 [exp]	0	1
AT5G39740		OLI7, RPL5B	OLIGOCELLULA 7, ribosomal prot...		Potri.014G197100 [exp]	1.73	0.9257
AT5G50810		TIM8	translocase inner membrane sub...		Potri.015G102000 [exp]	1.73	0.9220
AT3G05560			Ribosomal L22e protein family ...		Potri.002G204100 [exp]	3.46	0.9205	RPL22.4
AT3G09630			Ribosomal protein L4/L1 family...		Potri.006G132551 [exp]	4.00	0.9141
AT3G06700			Ribosomal L29e protein family ...		Potri.010G142001 [exp]	6.00	0.9106
AT2G45860			unknown protein		Potri.002G158300 [exp]	7.07	0.8693
AT2G44120			Ribosomal protein L30/L7 famil...		Potri.006G073200 [exp]	7.21	0.9076
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Potri.015G112900 [exp]	8.36	0.9170	P40.4
AT1G74050			Ribosomal protein L6 family pr...		Potri.001G271500 [exp]	8.60	0.9232
AT4G28510		ATPHB1	prohibitin 1 (.1)		Potri.007G134700 [exp]	9.79	0.8909	PHB1.1

Compare expression of checked genes

Potri.008G063200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.