Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55800 629 / 0 SBPASE sedoheptulose-bisphosphatase (.1) AT1G43670 97 / 2e-22 FINS1, AtcFBP FRUCTOSE INSENSITIVE 1, Arabidopsis thaliana cytosolic fructose-1,6-bisphosphatase, Inositol monophosphatase family protein (.1) AT3G54050 97 / 4e-22 HCEF1 high cyclic electron flow 1 (.1.2) AT5G64380 82 / 4e-17 Inositol monophosphatase family protein (.1) AT4G18440 77 / 6e-15 L-Aspartase-like family protein (.1) AT1G36280 76 / 8e-15 L-Aspartase-like family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G193300 [exp] 702 / 0 AT3G55800 625 / 0.0 sedoheptulose-bisphosphatase (.1) Potri.005G191400 [exp] 100 / 1e-23 AT1G43670 609 / 0.0 FRUCTOSE INSENSITIVE 1, Arabidopsis thaliana cytosolic fructose-1,6-bisphosphatase, Inositol monophosphatase family protein (.1) Potri.016G106900 [exp] 97 / 4e-22 AT3G54050 619 / 0.0 high cyclic electron flow 1 (.1.2) Potri.002G069000 [exp] 95 / 1e-21 AT1G43670 619 / 0.0 FRUCTOSE INSENSITIVE 1, Arabidopsis thaliana cytosolic fructose-1,6-bisphosphatase, Inositol monophosphatase family protein (.1) Potri.010G193400 [exp] 96 / 4e-21 AT1G36280 758 / 0.0 L-Aspartase-like family protein (.1.2) Potri.016G109000 [exp] 93 / 2e-20 AT3G54050 526 / 0.0 high cyclic electron flow 1 (.1.2) Potri.017G042900 [exp] 80 / 4e-16 AT5G64380 552 / 0.0 Inositol monophosphatase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028261 [exp] 654 / 0 AT3G55800 611 / 0.0 sedoheptulose-bisphosphatase (.1) Lus10040228 [exp] 646 / 0 AT3G55800 611 / 0.0 sedoheptulose-bisphosphatase (.1) Lus10018885 [exp] 98 / 2e-22 AT1G43670 620 / 0.0 FRUCTOSE INSENSITIVE 1, Arabidopsis thaliana cytosolic fructose-1,6-bisphosphatase, Inositol monophosphatase family protein (.1) Lus10028580 [exp] 97 / 4e-22 AT1G43670 618 / 0.0 FRUCTOSE INSENSITIVE 1, Arabidopsis thaliana cytosolic fructose-1,6-bisphosphatase, Inositol monophosphatase family protein (.1) Lus10027748 [exp] 94 / 1e-20 AT3G54050 655 / 0.0 high cyclic electron flow 1 (.1.2) Lus10035545 [exp] 94 / 1e-20 AT3G54050 655 / 0.0 high cyclic electron flow 1 (.1.2) Lus10021115 [exp] 90 / 2e-19 AT3G54050 647 / 0.0 high cyclic electron flow 1 (.1.2) Lus10007061 [exp] 85 / 8e-18 AT5G64380 549 / 0.0 Inositol monophosphatase family protein (.1) Lus10040229 [exp] 81 / 2e-16 AT1G36280 744 / 0.0 L-Aspartase-like family protein (.1.2) Lus10017195 [exp] 80 / 3e-16 AT3G54050 601 / 0.0 high cyclic electron flow 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0171 [poplar] [flax] Phospoesterase PF00316 [poplar] [flax] FBPase Fructose-1-6-bisphosphatase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.008G063800.9 pacid=42807366 polypeptide=Potri.008G063800.9.p locus=Potri.008G063800 ID=Potri.008G063800.9.v4.1 annot-version=v4.1 ATGGGCGAAGGCTCAGGACATTCTCTTCTCACCTACAAAAGTGCATTGCAGGGAATAGCAAAGCTTCAGGTTAATGAAACTCGCTTGAGTGAAGACTTGA ATCAATCATGGGAGGTGCTTGCTGAACCAATACAGACTAGTCTGAAATCAAGCTCGCTATTTGGGGAGACGTTGCGCTTCATACCAAGATCATCACTAAG GGTTTCAAAAGCAAAGAACTCTTCCCTTGTGACCAGATGTGAGATTGGTGATAGCCTGGAAGAATTCCTTGCAAAGGCAACTCCAGATAAGGGACTGATT AGGGTGATGATGTGCATGGGCGAGGCATTGAGGACCATTGCCTTCAAAGTCAGGACTGCTTCCTGTGGAGGAACGGCTTGTGTGAACTCCTTTGGAGATG AGCAGCTTGCTGTGGATATGCTTGCCAACAACCTTCTTTTTGAGGCTTTGACTCACTCGCATTTCTGCAAATATGCTTGCTCTGAGGAGGTCCCTGAACT GCAAGACATGGGTGGCCCCGTTGAAGGTGGATTCAGTGTTGCTTTTGATCCACTTGATGGTTCCAGCATTGTCGACACAAATTTCTCTGTGGGCACCATC TTTGGAGTGTGGCCAGGAGAAAAATTAATTGGGGTAACGGGGAGAGATCAAGTGGCTGCAGCCATGGGGGTTTACGGTCCTCGAACTACATACGTTCTTG CTCTTAAAGACTACCCTGGCACCCATGAGTTTCTTCTTCTTGATGAAGGAAAATGGCAACATGTCAAAGAGACAACAGAGGTTGGTGAAGGGAAACTTTT CTCCCCTGGAAATTTGAGGGCCACATTTGACAACCCTGACTATGAAAAGTTGATCAACTACTACGTAAAAGAGAAGTACACCTTGAGATACACAGGAGGG ATGGTGCCAGATGTCAATCAGATCATAGTTAAAGAGAAGGGTGTCTTCACCAATGTGATTTCTCCAACTTCCAAAGCCAAGCTGAGATTGTTATTTGAGG TTGCTCCTTTGGGGTTATTGGTTGAAAAAGCTGGGGGTTACAGTAGTGATGGTCATAAGTCTGTGCTAGACAAGGAAATAATAAATCTTGATGACAGAAC TCAAGTTGCATATGGATCCAAGAATGAGATTATCCGATTTGAGGAAACTCTGTATGGGAAATCAAGGCTCAAGGCCGAGGGTGTTCCTGTTGGAGCTGCT GCTTAA
AA sequence Show only first row Show all	>Potri.008G063800.9 pacid=42807366 polypeptide=Potri.008G063800.9.p locus=Potri.008G063800 ID=Potri.008G063800.9.v4.1 annot-version=v4.1 MGEGSGHSLLTYKSALQGIAKLQVNETRLSEDLNQSWEVLAEPIQTSLKSSSLFGETLRFIPRSSLRVSKAKNSSLVTRCEIGDSLEEFLAKATPDKGLI RVMMCMGEALRTIAFKVRTASCGGTACVNSFGDEQLAVDMLANNLLFEALTHSHFCKYACSEEVPELQDMGGPVEGGFSVAFDPLDGSSIVDTNFSVGTI FGVWPGEKLIGVTGRDQVAAAMGVYGPRTTYVLALKDYPGTHEFLLLDEGKWQHVKETTEVGEGKLFSPGNLRATFDNPDYEKLINYYVKEKYTLRYTGG MVPDVNQIIVKEKGVFTNVISPTSKAKLRLLFEVAPLGLLVEKAGGYSSDGHKSVLDKEIINLDDRTQVAYGSKNEIIRFEETLYGKSRLKAEGVPVGAA A

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55800		SBPASE	sedoheptulose-bisphosphatase (...		Potri.008G063800 [exp]	0	1
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Potri.008G187400 [exp]	1.00	0.9895	Pt-AOAT1.2
AT1G64680			unknown protein		Potri.001G083300 [exp]	1.41	0.9890
AT1G67700			unknown protein		Potri.010G053600 [exp]	1.73	0.9847
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Potri.010G045100 [exp]	4.00	0.9805
					Potri.006G069900 [exp]	4.12	0.9704
AT1G55480		ZKT	protein containing PDZ domain,...		Potri.003G222200 [exp]	4.58	0.9816
AT3G14420			Aldolase-type TIM barrel famil...		Potri.011G112700 [exp]	4.89	0.9828
AT4G03280		PGR1, PETC	PROTON GRADIENT REGULATION 1, ...		Potri.019G118500 [exp]	6.32	0.9824	PETC.1
AT3G26650		GAPA-1, GAPA	GLYCERALDEHYDE 3-PHOSPHATE DEH...		Potri.014G140500 [exp]	6.92	0.9818
AT3G21750		UGT71B1	UDP-glucosyl transferase 71B1 ...		Potri.016G016000 [exp]	7.74	0.9772

Compare expression of checked genes

Potri.008G063800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.