Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	COI1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39940 794 / 0 COI1 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) AT4G03190 297 / 6e-93 ATGRH1, ATGER1, AFB1, GRH1 AUXIN SIGNALING F BOX PROTEIN 1, GRR1-like protein 1 (.1) AT3G62980 282 / 6e-87 AtTIR1, TIR1 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) AT1G12820 280 / 2e-86 IPS1, AFB3 auxin signaling F-box 3 (.1) AT5G49980 276 / 1e-84 AFB5 auxin F-box protein 5 (.1) AT3G26810 268 / 4e-82 AFB2 auxin signaling F-box 2 (.1) AT4G24390 266 / 1e-80 AFB4 auxin signaling F-box 4, RNI-like superfamily protein (.1.2) AT4G15475 64 / 3e-10 F-box/RNI-like superfamily protein (.1) AT3G07550 60 / 3e-09 RNI-like superfamily protein (.1.2) AT2G25490 58 / 2e-08 FBL6, EBF1 EIN3-binding F box protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G192900 [exp] 1064 / 0 AT2G39940 790 / 0.0 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) Potri.004G033900 [exp] 298 / 5e-93 AT1G12820 654 / 0.0 auxin signaling F-box 3 (.1) Potri.011G042400 [exp] 291 / 1e-90 AT3G62980 649 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Potri.005G159300 [exp] 282 / 1e-86 AT5G49980 934 / 0.0 auxin F-box protein 5 (.1) Potri.002G102700 [exp] 282 / 1e-86 AT5G49980 911 / 0.0 auxin F-box protein 5 (.1) Potri.002G207800 [exp] 273 / 8e-84 AT3G62980 937 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Potri.014G134800 [exp] 265 / 1e-80 AT3G62980 947 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Potri.001G323100 [exp] 259 / 1e-78 AT3G26810 893 / 0.0 auxin signaling F-box 2 (.1) Potri.017G061600 [exp] 257 / 1e-77 AT3G26810 902 / 0.0 auxin signaling F-box 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014836 [exp] 868 / 0 AT2G39940 827 / 0.0 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) Lus10028265 [exp] 858 / 0 AT2G39940 816 / 0.0 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) Lus10040224 [exp] 857 / 0 AT2G39940 816 / 0.0 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) Lus10009883 [exp] 502 / 2e-173 AT2G39940 480 / 4e-165 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) Lus10020086 [exp] 296 / 1e-92 AT3G62980 644 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10006738 [exp] 293 / 2e-91 AT1G12820 647 / 0.0 auxin signaling F-box 3 (.1) Lus10018426 [exp] 282 / 2e-85 AT3G62980 634 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10018425 [exp] 273 / 6e-84 AT3G62980 593 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10011262 [exp] 265 / 9e-81 AT3G62980 588 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10035160 [exp] 241 / 8e-72 AT3G26810 894 / 0.0 auxin signaling F-box 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G064400.1 pacid=42808546 polypeptide=Potri.008G064400.1.p locus=Potri.008G064400 ID=Potri.008G064400.1.v4.1 annot-version=v4.1 ATGGAAGAAAATCACAATAAAAAGAACAGCTACTTAAATTGTAGCGGAGGTGGTGGGGGGATGTCCGACGTCGTATTAGGGCTCGTGATGCCGTACATAA ACGACCCGCGGGACCGCGACGCCGTTTCGTTAGTTTGCCGGAGATGGTACGAGCTAGATGCGTTAACACGGAAGAACGTGACTATAGCTTTTTGTTACAG TACAAGTCCAGATCGATTACGACGTCGTTTTAATGACATTGAATCATTAAAGCTAAAAGGGAAACCCCGGGCTGCTATGTTTTTTAATTTGATACCGGAG GATTGGGGAGGGTTTGTGACTCCATGGGTTAATGAAATAGCGGAGAGTTTTAATTGCTTGAAATCGCTTCATTTTAGAAGGATGATTGTTAAAGATTCGG ATCTGGAGTTACTTGCTAGGTCCAGAGGGAGACTTTTGCAGGTTTTGAAGCTTGATAAGTGCTCTGGGTTTTCCACGGATGGCCTTTCGCACATCGGTCG CTCTTGCAGGCAATTGAGAACATTATTCTTGGAAGAGAGTGCAATTGTTGAGAGAGATGGTGACTGGCTCCATGAGCTTGCTACGAACAATACAGTTCTC GAGACTCTAAATTTTTACATGACAGAACTTACCAGAGTCAGATCGGAAGACCTTGAGCTTCTTGCCAGGAACTGTCGTTCATTAGTCTCTGTAAAGGTTA GCGACTGTGAAATCTTGGATCTTGTTGGTTTCTTTCATGCTGCATCTGCTTTAGAGGAATTTTGTGGAGGTTCCTTCAATGAGCCAGATGAACCAGACAA ATACTCTGCTGTCAAATTCCCCCCAAAATTATGCTGTTTGGGTCTTAGCTATATGGAGAAGAACGTAATGTCAATAGTGTTTCCTTTTGCATCCCTGCTC AAAAAGCTGGATCTCCTCTACGCTTTTCTTGGCACGGAAGATCATTGTGTTTTAGTCCAAAGGTGCCCCAACTTAGAAGTTCTCGAGACAAGAAATGTTA TTGGAGATAGAGGGTTGGAAGCCCTTGCCCAGAGTTGTAAGCTACTAAAGAGGCTTCGAATAGAGCGTGGTGCCGATGAGCAGGGAATGGAGGATGTGGA TGGCCGAGTTTCACATAGAGGATTAATTGCCTTGGCTCAAGGCTGCTTAGAACTCGAGTACATCGCCGTTTATGTTTCTGATATTACCAATGCAGCTCTA GAACATATGGGCACATACTCAAAGAACCTCAATGATTTCCGCCTGGTCTTGCTTGAGCAAGAAGAGAGGATAACCGACCTGCCCCTTGACAATGGAGTTC GAGCTCTATTAAGGGGCTGTGAAAAGCTCCAAAGGTTCGGTCTGTATCTCCGACCAGGGGGTTTGACTGATGTGGGTCTTGGATATATTGGACAGTACAG CAGACGAGTAAGATGGATGATTCTAGGTAGTGTTGGGGAGTCTGATGAAGGGCTTTTGGCGTTTTCTAGAGGCTGTCCTAGCCTGCAAAAACTTGAAATG AGGGCCTGTTGCTTCAGTGAGAGTGCACTGGCTAGAGCTGCCTTGCAACTGACTTCTCTGAGGTACTTGTGGGTGCATGGTTATAGAGAGACCTCTACTG GTCATCGTGATCTCTTAACAATGGTTCGCCCATTTTGGAACATCGAATTGATTCCTTCTAGGAAGGTTGAGTCGGTTAATGAAGCTGGAGAAAATATTGT TTCCGAGAATCCAGCCCACATTCTTGCATATTACTCCCTTGCTGGACCAAGAACAGACTTTCCAGATACTGTGAGACCACTGGATCCAGCGAACATAGTT GCTGCGTAG
AA sequence Show only first row Show all	>Potri.008G064400.1 pacid=42808546 polypeptide=Potri.008G064400.1.p locus=Potri.008G064400 ID=Potri.008G064400.1.v4.1 annot-version=v4.1 MEENHNKKNSYLNCSGGGGGMSDVVLGLVMPYINDPRDRDAVSLVCRRWYELDALTRKNVTIAFCYSTSPDRLRRRFNDIESLKLKGKPRAAMFFNLIPE DWGGFVTPWVNEIAESFNCLKSLHFRRMIVKDSDLELLARSRGRLLQVLKLDKCSGFSTDGLSHIGRSCRQLRTLFLEESAIVERDGDWLHELATNNTVL ETLNFYMTELTRVRSEDLELLARNCRSLVSVKVSDCEILDLVGFFHAASALEEFCGGSFNEPDEPDKYSAVKFPPKLCCLGLSYMEKNVMSIVFPFASLL KKLDLLYAFLGTEDHCVLVQRCPNLEVLETRNVIGDRGLEALAQSCKLLKRLRIERGADEQGMEDVDGRVSHRGLIALAQGCLELEYIAVYVSDITNAAL EHMGTYSKNLNDFRLVLLEQEERITDLPLDNGVRALLRGCEKLQRFGLYLRPGGLTDVGLGYIGQYSRRVRWMILGSVGESDEGLLAFSRGCPSLQKLEM RACCFSESALARAALQLTSLRYLWVHGYRETSTGHRDLLTMVRPFWNIELIPSRKVESVNEAGENIVSENPAHILAYYSLAGPRTDFPDTVRPLDPANIV AA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39940		COI1	CORONATINE INSENSITIVE 1, RNI-...		Potri.008G064400 [exp]	0	1	COI1.2
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Potri.012G070900 [exp]	3.46	0.8987
AT5G15330		ATSPX4	ARABIDOPSIS THALIANA SPX DOMAI...		Potri.017G086600 [exp]	6.00	0.8871
AT1G62400		HT1	high leaf temperature 1, Prote...		Potri.004G001900 [exp]	7.74	0.8583
AT1G33240	Trihelix	AT-GTL2, AT-GTL...	GT2-LIKE 1, GT-2-like 1 (.1)		Potri.001G454500 [exp]	9.16	0.8493
AT5G06950	bZIP	TGA2, AHBP-1B	bZIP transcription factor fami...		Potri.006G039000 [exp]	9.48	0.8874
AT1G09710	MYB		Homeodomain-like superfamily p...		Potri.002G106500 [exp]	9.59	0.8886
AT4G10790			UBX domain-containing protein ...		Potri.001G085600 [exp]	10.67	0.8888
AT3G54000			unknown protein		Potri.006G093000 [exp]	10.81	0.8763
AT1G36370		SHM7	serine hydroxymethyltransferas...		Potri.001G212000 [exp]	15.29	0.8515	SHMT9
AT3G57990			unknown protein		Potri.016G046900 [exp]	15.29	0.8836

Compare expression of checked genes

Potri.008G064400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.