Plant FIBer expression Database

Potri.008G064500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G39950 343 / 6e-109 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G192800
[exp]
963 / 0 AT2G39950 444 / 1e-147 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040223
[exp]
595 / 0 AT2G39950 404 / 2e-132 unknown protein
Lus10028266
[exp]
581 / 0 AT2G39950 404 / 1e-132 unknown protein
PFAM info
Representative CDS sequence
>Potri.008G064500.1 pacid=42808118 polypeptide=Potri.008G064500.1.p locus=Potri.008G064500 ID=Potri.008G064500.1.v4.1 annot-version=v4.1
ATGGCTAATTCTAAAAAACAAGAATTCAACGAAGATCGCGTTGAACAATCAAACGGCAACGACTTCGACGACTCATCATCGATTTTGAACGCTGGCGGAA
CCTCAACCGCTGGATCTGGTAGGGTTTCGAGAGAGCGGAGTGAGATTAGTTTAACCGAGCGATTGACGGACATTCTAGTGGACCAAGGAGACGGAGATTT
GTTGCTTCAAAGGAACGATCGTGAAGACAGGGTTTTGCAGTGGCTGCAAGCGCTAGATATGCAGGTCATTGGGGCTTGCAGAGCTGATGAGAGGTTAAAG
CCGTTGTTGAAATTGAATGCTTCCAGTAGTGTGGCTGAGGATCGGCTCTTAGCGCATCTCAGTCAGCACTTTAAGCCGTCGGAGGTTGGTATGCTAGCTA
GGTGTTTCTGCATACCACTGGTTTCGATTCGTGCTGGGAAGATTAACAAGCAGGGGACTCTACTGTGCCCGACTGCCATAAGGGGGGATTTAAATCTTAC
ACTGTTGCCATCATCTGATCTGCGCCTCTCATTCAGCGGTGATGATGGTAATACAGAAAGGCTATTCACCCTAAGTGGTAAAACCCAATGTGCTGCTGTT
GAAGTTAATGAGATCCCCGCTGACAGTTCTGGCCGATCTTTCAGCTTAAAGATGTCAGATGGCAGAGTTTTTTACTTTTGGTGCTCGGAGAAATCAAAGC
TTCTGGGAATTGAATTGCTTGCAAAGATGAAAGATTTACTGAAGAGGAAACCGTCTATAGCTGATTTGACTGGAATCAGCAAGTCACGTCTTGATTGCTT
TGCAACTCACCTTCGTGCCTACCTTGTGGGAAGCAATGGCCAGGGAATTTCTGCTTGCTCTCCTGCCTCTTCCTCAACCACTCCCGAAACCTCTGATTCA
ACCTCCACAACAAAGTCTCTGCGCACCAGACATGTTGGCAATCAAGCAGTAAAAACATATTCAGCTTATCAGGGAAGCCTCAGTCCAAGATCAAGTTCCT
TCAAAGAGGGCTTACCCAGAAGCTTGTCTTCTTTAAGGAGTGCTGCCAAGGAAAAGTTAAGGCGGCGTGTGGACAGCCATCTTTCAGCAGTTGATAACAT
GATGGTTGCATTGCCACTCAGCAATGATGTCTCTTGCAATCAATCTGAAAATGAGAAGTTGCAGGAAGCTAAGAGTTGCCGCCCTTTACCCTCTAGTGTT
CTTGAATCTCTTGGTAGATTGTCTTTGCCACCGTTTCAGCTCCCTGTATCTCATGTTTTGTCAAGTCCACCTCTCTCTCCATACTATTGTTGGTGCCCCC
AAGGTACATCGACTTTGCAATATCCTTCCACACCTTTAGAAATCTCAACCTCATCTATTGAATCACCTTTACTGCCACCCCTTCCTCCATTTTTATCTGC
CAGTAGGCCATCCAACCTGTTAAGTCCTATACCACCTCTCAGTTTGGCTGACCTTCCCTCACTGGATTTTCCTGTTTTGCTGCCAGACCAATTCGTTCGG
TTGCCAATTCCAAGTTCACAGCAAATCCCAACTTTCACTCCTTTAATGTGCGATCCGATTGTTCACATTCCAGTCATTGATGTTTGTTCCTCAGGTCAAG
GCTACCTAGTGAGTGCTGGACCAACTATTGCAACCACCATTCCACCTTTGCATACAAAACTTGTAAACCCACTGATCCCTAATACTGCTGATTCTGCGGT
GGAGAAGGGTGCGAGAGAGACTCTGAGATTGCTCATCAGTAGTACAAGCCAAACCAATCCTCAATTTATGGATGTCTTGCCCGCTGTTTTAACCAATACT
GATAAGAAGAGTATGCTTACCACTGGAAGCTGGAGCCTTTACTCAGGAACCAGAGGCGTTGATGCTATTGCAAACAGAATTGCCACCATGGGCCTGGTTT
CATTATCTGAGTACTCCATAGGAGATTCCGTTGCAGAGATGAGTGGCAGCTGTGACAATACCAATACTTTGCCTGACAATCTGCCAGATGAATCTAGTGC
TATGGATGGGCCATATTCAGATGATGATTGTACTCTGTTTTCAAACGCTGAGGAAGGAACCAATTAA
AA sequence
>Potri.008G064500.1 pacid=42808118 polypeptide=Potri.008G064500.1.p locus=Potri.008G064500 ID=Potri.008G064500.1.v4.1 annot-version=v4.1
MANSKKQEFNEDRVEQSNGNDFDDSSSILNAGGTSTAGSGRVSRERSEISLTERLTDILVDQGDGDLLLQRNDREDRVLQWLQALDMQVIGACRADERLK
PLLKLNASSSVAEDRLLAHLSQHFKPSEVGMLARCFCIPLVSIRAGKINKQGTLLCPTAIRGDLNLTLLPSSDLRLSFSGDDGNTERLFTLSGKTQCAAV
EVNEIPADSSGRSFSLKMSDGRVFYFWCSEKSKLLGIELLAKMKDLLKRKPSIADLTGISKSRLDCFATHLRAYLVGSNGQGISACSPASSSTTPETSDS
TSTTKSLRTRHVGNQAVKTYSAYQGSLSPRSSSFKEGLPRSLSSLRSAAKEKLRRRVDSHLSAVDNMMVALPLSNDVSCNQSENEKLQEAKSCRPLPSSV
LESLGRLSLPPFQLPVSHVLSSPPLSPYYCWCPQGTSTLQYPSTPLEISTSSIESPLLPPLPPFLSASRPSNLLSPIPPLSLADLPSLDFPVLLPDQFVR
LPIPSSQQIPTFTPLMCDPIVHIPVIDVCSSGQGYLVSAGPTIATTIPPLHTKLVNPLIPNTADSAVEKGARETLRLLISSTSQTNPQFMDVLPAVLTNT
DKKSMLTTGSWSLYSGTRGVDAIANRIATMGLVSLSEYSIGDSVAEMSGSCDNTNTLPDNLPDESSAMDGPYSDDDCTLFSNAEEGTN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G39950 unknown protein Potri.008G064500
[exp]
0 1
AT5G46210 CUL4, ATCUL4 cullin4 (.1) Potri.011G084400
[exp]
3.87 0.8091
AT2G31260 ATAPG9, APG9 autophagy 9 (APG9) (.1) Potri.002G039900
[exp]
4.12 0.8770 APG9.1
AT5G04670 Enhancer of polycomb-like tran... Potri.008G024300
[exp]
5.19 0.8538
AT2G26140 FTSH4 FTSH protease 4 (.1) Potri.006G227700
[exp]
12.00 0.8245 Pt-FTSH4.1
AT3G26990 ENTH/VHS family protein (.1) Potri.001G325700
[exp]
13.60 0.8456
AT1G49880 EMB3106, AtErv1... EMBRYO DEFECTIVE 3106, Erv1/Al... Potri.001G296000
[exp]
14.96 0.8475
AT3G09560 ATPAH1 PHOSPHATIDIC ACID PHOSPHOHYDRO... Potri.006G214800
[exp]
15.16 0.8171
AT1G63850 BTB/POZ domain-containing prot... Potri.004G154600
[exp]
15.29 0.8431
AT3G62200 Putative endonuclease or glyco... Potri.005G003800
[exp]
15.42 0.8070
AT2G20330 Transducin/WD40 repeat-like su... Potri.014G193500
[exp]
15.71 0.8111

Potri.008G064500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.