Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39960 308 / 2e-108 Microsomal signal peptidase 25 kDa subunit (SPC25) (.1) AT4G04200 254 / 2e-87 Microsomal signal peptidase 25 kDa subunit (SPC25) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G192700 [exp] 352 / 7e-126 AT2G39960 321 / 1e-113 Microsomal signal peptidase 25 kDa subunit (SPC25) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014838 [exp] 272 / 3e-93 AT2G39960 273 / 8e-94 Microsomal signal peptidase 25 kDa subunit (SPC25) (.1) Lus10009885 [exp] 236 / 3e-79 AT2G39960 248 / 5e-84 Microsomal signal peptidase 25 kDa subunit (SPC25) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06703 [poplar] [flax] SPC25 Microsomal signal peptidase 25 kDa subunit (SPC25)
Representative CDS sequence Show only first row Show all	>Potri.008G064700.1 pacid=42807277 polypeptide=Potri.008G064700.1.p locus=Potri.008G064700 ID=Potri.008G064700.1.v4.1 annot-version=v4.1 ATGGCAAACAAGAACGCAAAGAAGGCAAATCTCTTAGATCACCACTCAATCAAGCACATTCTGGACGAATCCGTCTCCGAGATTGTTATAAGTCGTGGAC ATGTAGAAGATGTGAGGATGAGCAATATAAGGTTGTTCTTGGGGACAATTATTATAGTGATTGCGCTTCTTGCTCAGTTTTACAACAAGAAGTTCCCTCA GAATCGGGACTTTTTGATCGGATGCATCGTATTGTATATAGTCTTCAATGGATTGTTGCAGCTGATCGTCCACTTAAAAGAGAAGAATGCTATCTTAGTT ACTTATCCACCCAAGGGATCTTACACCAGCACTGGTCTAGTCGTCTCTTCAAAATTGCCAAGATTTTCTGATGAGTACACACTTAGCATAGCTAGCGCAG ATCCTAAATCAATTTCTGCCGGGAAACCAGTTCAGTTTACCAAAAGCATCACCCAGTGGTTCACCAAGGATGGAGTTTTGGTGGAGGGCCTGTTCTGGAA AGATGTTGAAGCACTGATTGATGATTATGCAGCAGAACCAAAGAAGAGCAAGTGA
AA sequence Show only first row Show all	>Potri.008G064700.1 pacid=42807277 polypeptide=Potri.008G064700.1.p locus=Potri.008G064700 ID=Potri.008G064700.1.v4.1 annot-version=v4.1 MANKNAKKANLLDHHSIKHILDESVSEIVISRGHVEDVRMSNIRLFLGTIIIVIALLAQFYNKKFPQNRDFLIGCIVLYIVFNGLLQLIVHLKEKNAILV TYPPKGSYTSTGLVVSSKLPRFSDEYTLSIASADPKSISAGKPVQFTKSITQWFTKDGVLVEGLFWKDVEALIDDYAAEPKKSK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39960			Microsomal signal peptidase 25...		Potri.008G064700 [exp]	0	1
AT1G67250			Proteasome maturation factor U...		Potri.017G111900 [exp]	1.00	0.8959
AT2G18030			Peptide methionine sulfoxide r...		Potri.007G012900 [exp]	8.36	0.8666	PtrcMsrA5
AT1G77350			unknown protein		Potri.019G066600 [exp]	10.58	0.8867
AT1G60660		B5 #5, B5#5, AT...	ARABIDOPSIS CYTOCHROME B5-LIKE...		Potri.018G087600 [exp]	10.95	0.8846	B5.1
AT5G48580		FKBP15-2	FK506- and rapamycin-binding p...		Potri.002G248200 [exp]	11.66	0.8880
AT3G04780			Protein of unknown function (D...		Potri.013G039500 [exp]	12.12	0.8872
AT5G07960			unknown protein		Potri.015G056300 [exp]	15.87	0.8634
AT5G05760		ATSYP31, ATSED5...	T-SNARE SED 5, syntaxin of pla...		Potri.010G191100 [exp]	18.33	0.8337	Pt-SYP31.1
AT5G54750			Transport protein particle (TR...		Potri.001G418400 [exp]	18.33	0.8783
AT2G25610			ATPase, F0/V0 complex, subunit...		Potri.018G032600 [exp]	18.76	0.8650

Compare expression of checked genes

Potri.008G064700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.