Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39980 704 / 0 HXXXD-type acyl-transferase family protein (.1) AT5G01210 595 / 0 HXXXD-type acyl-transferase family protein (.1) AT5G42830 297 / 6e-96 HXXXD-type acyl-transferase family protein (.1) AT5G07870 275 / 5e-87 HXXXD-type acyl-transferase family protein (.1) AT5G07850 270 / 2e-85 HXXXD-type acyl-transferase family protein (.1) AT5G07860 266 / 9e-84 HXXXD-type acyl-transferase family protein (.1) AT5G67150 239 / 9e-74 HXXXD-type acyl-transferase family protein (.1) AT3G50300 225 / 3e-68 HXXXD-type acyl-transferase family protein (.1) AT3G50280 219 / 4e-66 HXXXD-type acyl-transferase family protein (.1) AT3G50270 215 / 2e-64 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G192400 [exp] 938 / 0 AT2G39980 708 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.016G112400 [exp] 641 / 0 AT5G01210 614 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.006G097500 [exp] 619 / 0 AT5G01210 633 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.014G025550 [exp] 327 / 2e-107 AT5G42830 579 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.014G025500 [exp] 322 / 2e-105 AT5G42830 576 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.014G025600 [exp] 315 / 7e-103 AT5G42830 565 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.003G057100 [exp] 284 / 5e-91 AT3G50280 303 / 4e-99 HXXXD-type acyl-transferase family protein (.1) Potri.003G057200 [exp] 282 / 3e-90 AT5G67150 297 / 1e-96 HXXXD-type acyl-transferase family protein (.1) Potri.003G057001 [exp] 281 / 7e-90 AT5G67150 275 / 3e-88 HXXXD-type acyl-transferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040222 [exp] 647 / 0 AT2G39980 633 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10028267 [exp] 641 / 0 AT2G39980 631 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10035519 [exp] 422 / 4e-145 AT5G01210 520 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10027779 [exp] 334 / 6e-112 AT5G01210 350 / 7e-119 HXXXD-type acyl-transferase family protein (.1) Lus10024809 [exp] 265 / 5e-83 AT5G42830 442 / 8e-153 HXXXD-type acyl-transferase family protein (.1) Lus10031148 [exp] 229 / 1e-69 AT5G67150 284 / 5e-91 HXXXD-type acyl-transferase family protein (.1) Lus10041591 [exp] 227 / 2e-68 AT5G67150 347 / 2e-115 HXXXD-type acyl-transferase family protein (.1) Lus10027500 [exp] 210 / 2e-62 AT5G23940 571 / 0.0 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) Lus10039256 [exp] 201 / 7e-59 AT5G23940 576 / 0.0 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) Lus10031725 [exp] 158 / 1e-43 AT3G50300 198 / 2e-59 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF02458 [poplar] [flax] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Potri.008G065000.1 pacid=42806123 polypeptide=Potri.008G065000.1.p locus=Potri.008G065000 ID=Potri.008G065000.1.v4.1 annot-version=v4.1 ATGCCTTCTGCTACTTCTGTAACAATTGTCTCACAATGCAACGTCTTCCCAGACCAAAAATCCACTCTAGAAGATCTCAAGCTCTCAGTCTCTGACCTCC CTATGCTTTCTTGCCACTACATCCAGAAGGGTGGCCTTTTCACTCGCCCTCCAACGCTCTCCATCGATTCCTTAATCTCCCACCTCAAGCAATCTCTTTC TCAAACTCTCTCTCACTTCCCTCCACTTGCAGGTCGCTTCAACACTGACTCCAATGGCTACATCTACATAACCTGCAACGACGCAGGCGTAGATTTCATC CATGCCACTGCAACCAGTATTTCCATCCAAGATATTCTCAGTCCACTTCACGTACCTGATTGCGTCAGAGGCTTGTTTGCTTTTGAGAGCACTGTTAGCT ACCAGGGCCATTATAAACCAATCGTGGCCGTTCAGGTCACAGAATTAGCTGATGGGGTTTTTATTGGTTGTTCAATGAACCATTCTGTTACTGATGGTAC TTCGTTTTGGACCTTCTTTAATACCTTTTCTGAAGTTTCGAGAGGAATCAAGAAAATATCAAGACAGCCTGATTTCTCGAGAAACTCAATCTTGATTTCT GAAGCTGTACTTAAAGTTCCTCAAGGTGGCCCTCAAGTCACTTTTAATGAAAACGAGCCACTGTGTGAAAGAATTTTCAGTTTTAGCAGAGAAGCCATTT TGAAGCTGAAATCCAAAGTCAACAACAAGAAATGGACTCAAAAATCAGATAATACTAATGTTGACGCTGTTGAATTAATGGGAAAACAAAGCAATGATAC ACTGCTTCAGATTCACAACAAGGGCAAGATGACTGGAATCCTTGAAAGCTGGTTCAAGAACGCGGTTTCGAAACCGCAAGAAATGGAGTCAAACCTTTCA ATGGTGGAGATTTCGTCGTTTCAATCATTGTGTGCTCTTCTGTGGCGTGCGGTGACACGTGCAAGGAAGTTGAACCCGTCAAAAAGGACCACGTTTAGGA TGGCGGTTAATTGCCGTCACCGTTTGAACCCGAAACTCGATCCGCTATATTTTGGGAACGCAATTCAAAGCGTCCCCACATACGCGTCAGCTGGGGACGT GCTGTCTAGGGATCTACGCTGGTGTGCGGAGCAGCTGAATAAAAGTGTTGCTGCCCATAACGACGAAATGGTACGTCGTTTTGTCGAGGATTGGGAAAGT AATCCAAGGTGTTTCCCGTTAGGGAACTTGGATGGGGCGTCAATGACAATGGGTAGTTCACCAAGATTCCCAATGTACGATAATGATTTTGGGTGGGGTC GACCCTTGGCAGTTAGGAGTGGTAAGGCCAACAAGTTTGATGGTAAGATCTCTGCTTTTCCTGGCAGGGAAGGTAATGGTACTGTGGATCTTGAGGTTGT GTTGGCTCCTGAAGCAATGGCTGGGATTGAGTCTGATCACGAGTTCATGCAGTTTGTATCTCGCTAG
AA sequence Show only first row Show all	>Potri.008G065000.1 pacid=42806123 polypeptide=Potri.008G065000.1.p locus=Potri.008G065000 ID=Potri.008G065000.1.v4.1 annot-version=v4.1 MPSATSVTIVSQCNVFPDQKSTLEDLKLSVSDLPMLSCHYIQKGGLFTRPPTLSIDSLISHLKQSLSQTLSHFPPLAGRFNTDSNGYIYITCNDAGVDFI HATATSISIQDILSPLHVPDCVRGLFAFESTVSYQGHYKPIVAVQVTELADGVFIGCSMNHSVTDGTSFWTFFNTFSEVSRGIKKISRQPDFSRNSILIS EAVLKVPQGGPQVTFNENEPLCERIFSFSREAILKLKSKVNNKKWTQKSDNTNVDAVELMGKQSNDTLLQIHNKGKMTGILESWFKNAVSKPQEMESNLS MVEISSFQSLCALLWRAVTRARKLNPSKRTTFRMAVNCRHRLNPKLDPLYFGNAIQSVPTYASAGDVLSRDLRWCAEQLNKSVAAHNDEMVRRFVEDWES NPRCFPLGNLDGASMTMGSSPRFPMYDNDFGWGRPLAVRSGKANKFDGKISAFPGREGNGTVDLEVVLAPEAMAGIESDHEFMQFVSR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39980			HXXXD-type acyl-transferase fa...		Potri.008G065000 [exp]	0	1
AT3G16770	AP2_ERF	RAP2.03, ATEBP,...	RELATED TO AP2 3, ETHYLENE RES...		Potri.008G210900 [exp]	1.00	0.9087	Pt-RAP2.4,ERF35
					Potri.006G037900 [exp]	3.00	0.8506
AT5G53980	HD	ATHB52	homeobox protein 52 (.1)		Potri.007G135100 [exp]	3.16	0.8563
					Potri.011G044800 [exp]	6.63	0.7423
AT1G70950			TPX2 (targeting protein for Xk...		Potri.010G113000 [exp]	8.66	0.7696
AT1G78860			D-mannose binding lectin prote...		Potri.001G391200 [exp]	8.94	0.7912
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Potri.010G208600 [exp]	10.00	0.8340
AT4G27590			Heavy metal transport/detoxifi...		Potri.015G003800 [exp]	12.04	0.8333
AT1G30760			FAD-binding Berberine family p...		Potri.006G128900 [exp]	12.48	0.7840
AT2G39370		MAKR4	MEMBRANE-ASSOCIATED KINASE REG...		Potri.006G214700 [exp]	13.41	0.8305

Compare expression of checked genes

Potri.008G065000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.