Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11260 176 / 9e-57 HD WOX5B, WOX5 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1) AT5G05770 127 / 3e-38 HD WOX5A, WOX7 WUSCHEL related homeobox 5A, WUSCHEL related homeobox 7 (.1) AT3G18010 100 / 2e-25 HD WOX1 WUSCHEL related homeobox 1 (.1) AT5G59340 96 / 3e-24 HD WOX2 WUSCHEL related homeobox 2 (.1) AT2G28610 96 / 3e-24 HD PRS1, PRS, WOX3 WUSCHEL RELATED HOMEOBOX 3, PRESSED FLOWER 1, PRESSED FLOWER, Homeodomain-like superfamily protein (.1) AT1G46480 90 / 5e-22 HD WOX4 WUSCHEL related homeobox 4 (.1) AT2G17950 89 / 2e-21 HD WUS1, PGA6, WUS WUSCHEL 1, WUSCHEL, Homeodomain-like superfamily protein (.1) AT2G01500 85 / 3e-20 HD WOX6, PFS2, HOS9 WUSCHEL RELATED HOMEOBOX 6, PRETTY FEW SEEDS 2, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE 9, Homeodomain-like superfamily protein (.1) AT5G45980 72 / 5e-15 HD WOX9B, STPL, WOX8 WUSCHEL related homeobox 9B, STIMPY-LIKE, WUSCHEL related homeobox 8 (.1) AT2G33880 67 / 3e-13 HD WOX9A, STIP, WOX9, HB-3 WUSCHEL related homeobox 9A, WUSCHEL-RELATED HOMEOBOX 9, STIMPY, homeobox-3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G192100 [exp] 306 / 5e-108 AT3G11260 159 / 1e-49 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1) Potri.015G039100 [exp] 103 / 2e-26 AT3G18010 195 / 3e-59 WUSCHEL related homeobox 1 (.1) Potri.012G047700 [exp] 101 / 1e-25 AT3G18010 174 / 8e-51 WUSCHEL related homeobox 1 (.1) Potri.009G029200 [exp] 98 / 2e-25 AT5G59340 171 / 2e-52 WUSCHEL related homeobox 2 (.1) Potri.002G124100 [exp] 96 / 1e-24 AT1G46480 221 / 1e-72 WUSCHEL related homeobox 4 (.1) Potri.014G025300 [exp] 96 / 1e-24 AT1G46480 226 / 5e-75 WUSCHEL related homeobox 4 (.1) Potri.010G111400 [exp] 96 / 6e-24 AT3G18010 109 / 2e-27 WUSCHEL related homeobox 1 (.1) Potri.007G012100 [exp] 91 / 1e-22 AT2G17950 126 / 9e-35 WUSCHEL 1, WUSCHEL, Homeodomain-like superfamily protein (.1) Potri.001G237900 [exp] 89 / 5e-22 AT5G59340 166 / 2e-50 WUSCHEL related homeobox 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028271 [exp] 204 / 1e-66 AT3G11260 177 / 4e-56 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1) Lus10040219 [exp] 201 / 7e-66 AT3G11260 179 / 4e-57 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1) Lus10018011 [exp] 101 / 2e-25 AT3G18010 164 / 9e-47 WUSCHEL related homeobox 1 (.1) Lus10042007 [exp] 101 / 2e-25 AT3G18010 174 / 2e-50 WUSCHEL related homeobox 1 (.1) Lus10038480 [exp] 94 / 3e-24 AT2G28610 130 / 1e-37 WUSCHEL RELATED HOMEOBOX 3, PRESSED FLOWER 1, PRESSED FLOWER, Homeodomain-like superfamily protein (.1) Lus10024808 [exp] 90 / 5e-22 AT1G46480 195 / 7e-62 WUSCHEL related homeobox 4 (.1) Lus10041909 [exp] 91 / 9e-22 AT2G17950 145 / 4e-41 WUSCHEL 1, WUSCHEL, Homeodomain-like superfamily protein (.1) Lus10023332 [exp] 85 / 2e-21 AT2G28610 109 / 9e-31 WUSCHEL RELATED HOMEOBOX 3, PRESSED FLOWER 1, PRESSED FLOWER, Homeodomain-like superfamily protein (.1) Lus10016569 [exp] 88 / 3e-21 AT5G59340 121 / 6e-33 WUSCHEL related homeobox 2 (.1) Lus10028457 [exp] 89 / 4e-21 AT2G17950 146 / 3e-41 WUSCHEL 1, WUSCHEL, Homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00046 [poplar] [flax] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Potri.008G065400.1 pacid=42807798 polypeptide=Potri.008G065400.1.p locus=Potri.008G065400 ID=Potri.008G065400.1.v4.1 annot-version=v4.1 ATGGAAGAGAGAATGTCAGGCTTTTGTACCACAAAAGCAGGGCGTGGTGGGAGCAGTGGCAATAACTATGCCTCAGGAACTAAATGCGGGCGTTGGAATC CTACTATCGAACAAGGTAAACTTCTAACTGACTTGTTCAGGTCTGGTGTTCGAACCCCAAGTACTGATGAGATCCAAAACATCTCCACTCGGCTTAGTTT TTATGGCAAGATCGAGAGCAAGAACGTTTTCTACTGGTTTCAAAATCATAAAGCTAGGGAAAGACAGAAGAGGCGCAGAGTTTCTGTCGATGAGAAGGAT GTCATGATTCGTCGAGATGACAAATTTTCTTCTGCGCGATATTTTACTGAAATAGGTCAGGTGAACGAACGAGAACAAGTGATTGAGACTCTTCAACTTT TCCCTTTAAAATCCTTTGATGAAGTAGAGTCAGAGAAGTTCAGGTTGCAGGCAAATGAATGCAATGAAGCTGCAGCTGCGTTTTCTTATAAATTTGGTAC AGAAATGGATCGTCCACAACTAGATCTGCGATTAAGCTTTCTGTAA
AA sequence Show only first row Show all	>Potri.008G065400.1 pacid=42807798 polypeptide=Potri.008G065400.1.p locus=Potri.008G065400 ID=Potri.008G065400.1.v4.1 annot-version=v4.1 MEERMSGFCTTKAGRGGSSGNNYASGTKCGRWNPTIEQGKLLTDLFRSGVRTPSTDEIQNISTRLSFYGKIESKNVFYWFQNHKARERQKRRRVSVDEKD VMIRRDDKFSSARYFTEIGQVNEREQVIETLQLFPLKSFDEVESEKFRLQANECNEAAAAFSYKFGTEMDRPQLDLRLSFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G11260	HD	WOX5B, WOX5	WUSCHEL related homeobox 5B, W...		Potri.008G065400 [exp]	0	1
AT2G29490		GST19, ATGSTU1	GLUTATHIONE S-TRANSFERASE 19, ...		Potri.010G061100 [exp]	1.41	0.9500
AT4G36740	HD	HB-5, ATHB40	homeobox protein 40 (.1)		Potri.007G029500 [exp]	1.73	0.9534
					Potri.011G003325 [exp]	5.00	0.8749
AT4G37580		UNS2, COP3, HLS...	UNUSUAL SUGAR RESPONSE 2, HOOK...		Potri.001G044100 [exp]	5.74	0.9307
					Potri.012G023601 [exp]	12.96	0.8903
					Potri.002G111550 [exp]	14.00	0.8386
AT1G18590		SOT17, ATSOT17,...	ARABIDOPSIS SULFOTRANSFERASE 5...		Potri.011G048200 [exp]	15.32	0.9258
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Potri.008G175100 [exp]	16.43	0.8727
AT1G18590		SOT17, ATSOT17,...	ARABIDOPSIS SULFOTRANSFERASE 5...		Potri.011G049100 [exp]	17.14	0.9063
AT3G24255			RNA-directed DNA polymerase (r...		Potri.004G185050 [exp]	18.49	0.8835

Compare expression of checked genes

Potri.008G065400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.