Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39990 306 / 3e-105 AteIF3f, EIF2 Arabidopsis thaliana eukaryotic translation initiation factor 3 subunit F, eukaryotic translation initiation factor 2 (.1) AT3G11270 83 / 2e-18 MEE34 maternal effect embryo arrest 34, Mov34/MPN/PAD-1 family protein (.1.2) AT5G05780 81 / 7e-18 RPN8A, AE3, ATHMOV34 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) AT5G56280 49 / 1e-06 CSN6A COP9 signalosome subunit 6A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G192000 [exp] 386 / 9e-137 AT2G39990 431 / 7e-154 Arabidopsis thaliana eukaryotic translation initiation factor 3 subunit F, eukaryotic translation initiation factor 2 (.1) Potri.008G065300 [exp] 80 / 3e-17 AT5G05780 568 / 0.0 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) Potri.010G192200 [exp] 79 / 4e-17 AT5G05780 560 / 0.0 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) Potri.008G065200 [exp] 77 / 3e-16 AT5G05780 568 / 0.0 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) Potri.011G169900 [exp] 50 / 7e-07 AT5G56280 511 / 0.0 COP9 signalosome subunit 6A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028272 [exp] 353 / 2e-123 AT2G39990 431 / 9e-154 Arabidopsis thaliana eukaryotic translation initiation factor 3 subunit F, eukaryotic translation initiation factor 2 (.1) Lus10040218 [exp] 348 / 1e-121 AT2G39990 423 / 2e-150 Arabidopsis thaliana eukaryotic translation initiation factor 3 subunit F, eukaryotic translation initiation factor 2 (.1) Lus10027775 [exp] 75 / 1e-15 AT5G05780 555 / 0.0 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) Lus10035522 [exp] 75 / 2e-15 AT5G05780 550 / 0.0 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0366 [poplar] [flax] JAB PF01398 [poplar] [flax] JAB JAB1/Mov34/MPN/PAD-1 ubiquitin protease CL0366 [poplar] [flax] PF13012 [poplar] [flax] MitMem_reg Maintenance of mitochondrial structure and function
Representative CDS sequence Show only first row Show all	>Potri.008G065500.2 pacid=42807426 polypeptide=Potri.008G065501.1.p locus=Potri.008G065500 ID=Potri.008G065500.2.v4.1 annot-version=v4.1 ATGGCGGCGAGCGAGCATCAAACAGTCCTCCAATTCGCAACACCATCTTCGTCGACCCTATCCGCGAAAGTTCATCCTCTTGTGATCTTCAACATCTGCG ATTGCTACGTTAGGCGGCCTGATCAAGCTGAACGCGTCATTGGCACTCTCCTTGGCTCCGTATTACCTGATGGCACAGTTGATATCCGTAACTCTCATGC TGTCCCTCATAACGAATCCTCCGAACACGAAGTTATTGTTGGATGGTATTCAACCGGGTTCGGAGTTACTGGCGGTAGTGCATTGATTCATGACTTCTAT TCTAGAGAAGTTCCAAACCCTATTCAATATCTGTCGGTTGATACAGGATTCACGAATGGGGAGGGTACCATAAAGGCTCATGTTCTTAAACTTCAAGTTT CCCACCATTTTCTTTTTCTCGTTCCTCAAGCTAGAGTTGACATTTTGAAGACCACAATGATTGACAAAATTCCAAGTGATTTGGAAGGAATGGAAGTCTC TATGCAACGGCTACTAGCTCTAATTGATGGCATGTGCAATAAGGTTGATGATGTGGTCGAGGGGCGTGCTGCAGCGGATAATAACATAGGGTGGTTTATA TCAGATACTGTCACCTCCCTTCCCAAACTGTCACCACCCGTGTTTGATAAGCTTGTAAATGACAACGACCATTTACTCTTGCTGTATTTGTCAAGCATCA CCGGAACTCAGCTCAACTTAGCACAGAAATTGAATACAGCTGCTCAGATCCTCTGA
AA sequence Show only first row Show all	>Potri.008G065500.2 pacid=42807426 polypeptide=Potri.008G065501.1.p locus=Potri.008G065500 ID=Potri.008G065500.2.v4.1 annot-version=v4.1 MAASEHQTVLQFATPSSSTLSAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSHAVPHNESSEHEVIVGWYSTGFGVTGGSALIHDFY SREVPNPIQYLSVDTGFTNGEGTIKAHVLKLQVSHHFLFLVPQARVDILKTTMIDKIPSDLEGMEVSMQRLLALIDGMCNKVDDVVEGRAAADNNIGWFI SDTVTSLPKLSPPVFDKLVNDNDHLLLLYLSSITGTQLNLAQKLNTAAQIL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39990		AteIF3f, EIF2	Arabidopsis thaliana eukaryoti...		Potri.008G065500 [exp]	0	1
AT4G23630		RTNLB1, BTI1	Reticulan like protein B1, VIR...		Potri.012G035600 [exp]	5.91	0.8312
					Potri.011G073216 [exp]	16.34	0.8477
AT5G15110			Pectate lyase family protein (...		Potri.008G148800 [exp]	30.51	0.7075
AT1G14320		RPL10A, RPL10, ...	SUPPRESSOR OF ACAULIS 52, ribo...		Potri.013G159301 [exp]	34.11	0.8268
AT1G20140		ASK4	SKP1-like 4 (.1)		Potri.009G135800 [exp]	34.46	0.8042	SKP1.4
AT1G21720		PBC1	proteasome beta subunit C1 (.1...		Potri.002G080800 [exp]	34.77	0.7585	Pt-PBC2.2
AT5G66680		DGL1	DEFECTIVE GLYCOSYLATION, dolic...		Potri.004G157900 [exp]	34.81	0.8027
AT2G40220	AP2_ERF	ATABI4, GIN6, S...	SUCROSE UNCOUPLED 6, SUGAR-INS...		Potri.008G071100 [exp]	35.62	0.7050	DREB1,Pt-ABI4.1
AT5G10050			NAD(P)-binding Rossmann-fold s...		Potri.007G007300 [exp]	42.00	0.6847
AT5G39850			Ribosomal protein S4 (.1)		Potri.006G209900 [exp]	42.42	0.8156

Compare expression of checked genes

Potri.008G065500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.