Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	MDPIP1.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00430 514 / 0 PIP1;4, TMP-C, PIP1E TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) AT2G45960 507 / 0 PIP1;2, ATHH2, TMP-A, PIP1B TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) AT1G01620 482 / 4e-174 TMP-B, PIP1C, PIP1;3 PLASMA MEMBRANE INTRINSIC PROTEIN 1;3, plasma membrane intrinsic protein 1C (.1.2) AT4G23400 479 / 4e-173 PIP1D, PIP1;5 plasma membrane intrinsic protein 1;5 (.1) AT3G61430 477 / 3e-172 ATPIP1, PIP1;1, PIP1A PLASMA MEMBRANE INTRINSIC PROTEIN 1;1, ARABIDOPSIS THALIANA PLASMA MEMBRANE INTRINSIC PROTEIN 1, plasma membrane intrinsic protein 1A (.1.2) AT4G35100 385 / 7e-136 SIMIP, PIP3A, PIP2;7, PIP3 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2) AT2G37170 383 / 5e-135 PIP2;2, PIP2B PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) AT2G16850 380 / 7e-134 PIP3B, PIP2;8 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) AT2G37180 380 / 9e-134 PIP2C, PIP2;3, RD28 RESPONSIVE TO DESICCATION 28, PLASMA MEMBRANE INTRINSIC PROTEIN 2C, PLASMA MEMBRANE INTRINSIC PROTEIN 2;3, Aquaporin-like superfamily protein (.1) AT3G54820 379 / 2e-133 PIP2D, PIP2;5 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G191900 [exp] 563 / 0 AT4G00430 509 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Potri.003G128600 [exp] 523 / 0 AT4G00430 514 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Potri.016G113300 [exp] 513 / 0 AT4G00430 524 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Potri.006G098100 [exp] 496 / 8e-180 AT4G00430 482 / 4e-174 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Potri.006G128200 [exp] 397 / 1e-140 AT2G37170 490 / 3e-177 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Potri.006G128000 [exp] 394 / 3e-139 AT2G37170 487 / 5e-176 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Potri.010G222700 [exp] 394 / 3e-139 AT3G54820 484 / 6e-175 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1) Potri.009G013900 [exp] 389 / 2e-137 AT2G37170 458 / 8e-165 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Potri.004G176300 [exp] 388 / 5e-137 AT4G35100 513 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028273 [exp] 538 / 0 AT4G00430 511 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Lus10032283 [exp] 508 / 0 AT2G45960 526 / 0.0 TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) Lus10024651 [exp] 508 / 0 AT2G45960 526 / 0.0 TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) Lus10035483 [exp] 506 / 0 AT2G45960 520 / 0.0 TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) Lus10014840 [exp] 461 / 1e-165 AT2G45960 461 / 1e-165 TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) Lus10019934 [exp] 388 / 6e-137 AT2G37170 474 / 6e-171 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Lus10023184 [exp] 384 / 4e-135 AT2G37170 490 / 3e-177 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Lus10014978 [exp] 379 / 2e-133 AT2G16850 514 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10023515 [exp] 379 / 5e-133 AT3G54820 482 / 5e-174 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1) Lus10039222 [exp] 375 / 1e-131 AT2G16850 518 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [poplar] [flax] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Potri.008G065600.7 pacid=42807973 polypeptide=Potri.008G065600.7.p locus=Potri.008G065600 ID=Potri.008G065600.7.v4.1 annot-version=v4.1 ATGGAGGGCAAAGAAGAAGATGTTAGGCTGGGAGCTAACAGGTTCAATGAGAGGCAGCCAATTGGCACGGCAGCTCAGAGCCTAGATGACAAGGACTACA AGGAGCCACCCCCGGCACCATTGTTTGAGCCAGGCGAACTGACTTCATGGTCGTTTTACAGGGCCGGGATTGCAGAGTTCATGGCCACTTTCTTGTTTTT GTACATCACCGTTTTGACTGTGATGGGTGTGGTTAAGGACCAGACTAAGTGTACAACGGTTGGGATTCAAGGGATCGCTTGGGCCTTTGGCGGGATGATT TTCGCTCTTGTTTACTGTACAGCTGGAATTTCAGGTGGTCATATAAATCCTGCTGTGACTTTTGGGCTATTCTTAGCAAGGAAACTGTCCTTGACGAGGG CCGTGTTCTACATGGTGATGCAGTGCCTTGGTGCCATATGCGGTGCTGGTGTGGTGAAAGGATTTTACGGGAAAACAAACTACGAGTTGCATAATGGTGG TGCCAATATGGTCGCTCATGGTTACACCAAAGGTGATGGCCTTGGTGCTGAGATTGTCGGCACTTTTATTCTTGTCTACACTGTCTTCTCTGCAACTGAT GCCAAGCGTAGTGCCAGAGACTCCCATGTCCCGATTTTGGCACCTCTGCCAATTGGGTTCGCTGTGTTCTTGGTGCACTTGGCCACAATCCCAATTACAG GAACTGGGATCAACCCAGCTCGGAGTCTGGGTGCTGCAATCATCTTCAACAAGGACAGCGCCTGGGATGATCACTGGATTTTCTGGGTTGGCCCCTTCAT TGGAGCAGCACTTGCAGCTCTTTACCACCAGGTTGTGATCAGAGCCATTCCTTTCAAGAAGTGA
AA sequence Show only first row Show all	>Potri.008G065600.7 pacid=42807973 polypeptide=Potri.008G065600.7.p locus=Potri.008G065600 ID=Potri.008G065600.7.v4.1 annot-version=v4.1 MEGKEEDVRLGANRFNERQPIGTAAQSLDDKDYKEPPPAPLFEPGELTSWSFYRAGIAEFMATFLFLYITVLTVMGVVKDQTKCTTVGIQGIAWAFGGMI FALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMVMQCLGAICGAGVVKGFYGKTNYELHNGGANMVAHGYTKGDGLGAEIVGTFILVYTVFSATD AKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDSAWDDHWIFWVGPFIGAALAALYHQVVIRAIPFKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00430		PIP1;4, TMP-C, ...	TRANSMEMBRANE PROTEIN C, PLASM...		Potri.008G065600 [exp]	0	1	MDPIP1.3
AT3G62420	bZIP	ATBZIP53	basic region/leucine zipper mo...		Potri.008G106700 [exp]	2.23	0.7730
AT2G46680	HD	ATHB7, ATHB-7	ARABIDOPSIS THALIANA HOMEOBOX ...		Potri.002G176300 [exp]	7.34	0.7483	Pt-ATHB.4
AT2G39110			Protein kinase superfamily pro...		Potri.010G225300 [exp]	8.66	0.7348
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Potri.002G083700 [exp]	10.19	0.7215	ENOD8.4
AT2G29380		HAI3	highly ABA-induced PP2C gene 3...		Potri.012G002700 [exp]	19.62	0.7219
AT5G23370			GRAM domain-containing protein...		Potri.004G068100 [exp]	28.74	0.6964
AT3G01420		PADOX-1, ALPHA-...	plant alpha dioxygenase 1, alp...		Potri.008G106400 [exp]	30.74	0.7183	Pt-PIOX.1
AT5G41350			RING/U-box superfamily protein...		Potri.001G101700 [exp]	31.43	0.6554
AT5G06570			alpha/beta-Hydrolases superfam...		Potri.009G155800 [exp]	36.19	0.6190
AT1G65770		AMR1	ascorbic acid mannose pathway ...		Potri.005G105000 [exp]	36.98	0.6659

Compare expression of checked genes

Potri.008G065600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.