Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55830 470 / 5e-168 EPC1 ECTOPICALLY PARTING CELLS, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT5G04500 123 / 5e-31 glycosyltransferase family protein 47 (.1) AT1G80290 91 / 2e-20 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G191700 [exp] 613 / 0 AT3G55830 439 / 1e-155 ECTOPICALLY PARTING CELLS, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.010G232700 [exp] 108 / 6e-26 AT5G04500 987 / 0.0 glycosyltransferase family protein 47 (.1) Potri.008G028900 [exp] 108 / 1e-25 AT5G04500 992 / 0.0 glycosyltransferase family protein 47 (.1) Potri.006G278400 [exp] 103 / 6e-25 AT1G80290 352 / 2e-121 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040216 [exp] 551 / 0 AT3G55830 471 / 5e-168 ECTOPICALLY PARTING CELLS, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10028274 [exp] 543 / 0 AT3G55830 463 / 5e-165 ECTOPICALLY PARTING CELLS, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10031680 [exp] 285 / 5e-95 AT3G55830 273 / 3e-90 ECTOPICALLY PARTING CELLS, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10027392 [exp] 206 / 4e-64 AT3G55830 201 / 2e-62 ECTOPICALLY PARTING CELLS, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10037920 [exp] 113 / 1e-27 AT5G04500 1032 / 0.0 glycosyltransferase family protein 47 (.1) Lus10038646 [exp] 113 / 2e-27 AT5G04500 1009 / 0.0 glycosyltransferase family protein 47 (.1) Lus10020174 [exp] 110 / 2e-27 AT1G80290 391 / 1e-136 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF09258 [poplar] [flax] Glyco_transf_64 Glycosyl transferase family 64 domain
Representative CDS sequence Show only first row Show all	>Potri.008G065800.1 pacid=42807508 polypeptide=Potri.008G065800.1.p locus=Potri.008G065800 ID=Potri.008G065800.1.v4.1 annot-version=v4.1 ATGAGAGGAACCTTGTTGGCTAACCGTCGCGGGATGCAGAGATTCCGGCAACTTGCGACCACAGCCGTTAAATCGTCGAAGATCAAGCTCCTTCTCTTTT GTTGCATCGCGTTTACGCTAGTCGTGGTTGCTACCCGCGCGTCCGATTTTATGGGATGGACCAATCACAGCGATTCTCTTGATCAGTTCCTTCCTCCAGG GAAAGGATATGCTATTGTAATGAACACTTGGAAGAGATATGATCTGTTGAAGCAATCCATTTCTCATTATGCATCATGTTCAGGGCTCGAATCTATACAT ATTGTGTGGAGTGAGCCCAATCCTCCTTCAGATTCTCTTTCTACATTTTTAAACCATGTCATAGAGTCAAAAACTAGAGGGCTGAAGAAAGTTGAATTGA GTTTTGATATCAATAAGGAAGACAGTCTGAACAATAGATTCAAAGAAATACCAGGATTGAAGACAGATGCTGTTTTTTCAATTGATGATGATGTTATATT TCCTTGCTCCTCAGTGGAGTTTGCTTTCAAGGTTTGGCAAAGTGCCCCAAATGCAATGGTGGGCTTTGTTCCTCGTGCCCATTGGGTTGATAAAACGCTA GGGAAAACGGATTACTATACATATGGTGGATGGTGGTCTGTTTGGTGGACAGGCACTTACAGTATGGTACTATCAAAGGCAGCCTTTTTCCACAAGAAGT ATCTTAGGATGTACACCAATGAGATGCCAAAGTCAATCAAAGAATTTGTGACTAAGAATAGAAATTGTGAAGATATTGCGATGTCTTTTCTTGTTGCTAA TGCAACTGGTGCTCCCCCTATATGGGTGAAAGGTAAAATATTTGAGATTGGTTCGACTGGAATTAGTAGCTTGGGTGGACACGGTGAAAGAAGAACGAGA TGCATCAATAGATTTGCCGCTGAGTTGGGGCGAATGCCCCTGGTACCCACTACTGCTAAGGCTGTTGACAGCCGTTATACGTGGTTTTGGTGA
AA sequence Show only first row Show all	>Potri.008G065800.1 pacid=42807508 polypeptide=Potri.008G065800.1.p locus=Potri.008G065800 ID=Potri.008G065800.1.v4.1 annot-version=v4.1 MRGTLLANRRGMQRFRQLATTAVKSSKIKLLLFCCIAFTLVVVATRASDFMGWTNHSDSLDQFLPPGKGYAIVMNTWKRYDLLKQSISHYASCSGLESIH IVWSEPNPPSDSLSTFLNHVIESKTRGLKKVELSFDINKEDSLNNRFKEIPGLKTDAVFSIDDDVIFPCSSVEFAFKVWQSAPNAMVGFVPRAHWVDKTL GKTDYYTYGGWWSVWWTGTYSMVLSKAAFFHKKYLRMYTNEMPKSIKEFVTKNRNCEDIAMSFLVANATGAPPIWVKGKIFEIGSTGISSLGGHGERRTR CINRFAAELGRMPLVPTTAKAVDSRYTWFW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55830		EPC1	ECTOPICALLY PARTING CELLS, Nuc...		Potri.008G065800 [exp]	0	1
AT5G53200	MYB	TRY	TRIPTYCHON, Homeodomain-like s...		Potri.002G168900 [exp]	4.47	0.8097
AT1G15100		RHA2A	RING-H2 finger A2A (.1)		Potri.005G081200 [exp]	11.61	0.7768
AT1G66810	C3HZnF	AtC3H14	Zinc finger C-x8-C-x5-C-x3-H t...		Potri.005G176900 [exp]	11.74	0.7453
AT5G12870	MYB	ATMYB46	myb domain protein 46 (.1)		Potri.001G258700 [exp]	16.52	0.8075
AT4G25230		RIN2	RPM1 interacting protein 2 (.1...		Potri.001G124000 [exp]	17.32	0.7586
AT2G18670			RING/U-box superfamily protein...		Potri.018G098100 [exp]	20.97	0.7512
AT3G05010			Protein of unknown function, t...		Potri.005G044700 [exp]	20.97	0.7850
AT5G19860			Protein of unknown function, D...		Potri.003G217200 [exp]	21.97	0.7729
AT5G56540		ATAGP14, AGP14	arabinogalactan protein 14 (.1...		Potri.001G004100 [exp]	22.44	0.8012	Pt-AGP13.2
AT5G47120		ATBI-1, ATBI1	ARABIDOPSIS BAX INHIBITOR 1, B...		Potri.001G151800 [exp]	25.74	0.7524	ATBI.1

Compare expression of checked genes

Potri.008G065800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.