Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40000 532 / 0 ATHSPRO2 ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2, ortholog of sugar beet HS1 PRO-1 2 (.1) AT3G55840 484 / 1e-169 Hs1pro-1 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G191300 [exp] 881 / 0 AT2G40000 505 / 1e-177 ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2, ortholog of sugar beet HS1 PRO-1 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028275 [exp] 682 / 0 AT2G40000 526 / 0.0 ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2, ortholog of sugar beet HS1 PRO-1 2 (.1) Lus10040215 [exp] 671 / 0 AT2G40000 527 / 0.0 ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2, ortholog of sugar beet HS1 PRO-1 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0380 [poplar] [flax] IDO-like PF07014 [poplar] [flax] Hs1pro-1_C Hs1pro-1 protein C-terminus CL0380 [poplar] [flax] PF07231 [poplar] [flax] Hs1pro-1_N Hs1pro-1 N-terminus
Representative CDS sequence Show only first row Show all	>Potri.008G066000.1 pacid=42807410 polypeptide=Potri.008G066000.1.p locus=Potri.008G066000 ID=Potri.008G066000.1.v4.1 annot-version=v4.1 ATGATAGATTTAGATTGGAAAGCAAAAATGGTATCCTCCGATCCCCCGAACAAACCCCCCAGACTCTCTAGCAAGCTACATGTCTCCATCCCGGCTATAC AGTTTCGTGGCATCTCAAATACCTACCCGATTCCCGCTTCCGACTCTGTTTGTTCAGCTTACGAGTACTATCTCCGCCTCCCAGAGCTACGAAAGCTATG GAACCGAAAAGAGTTCTCGAATTGGAAAACAGAGTCTATACTAAAACCAGCTTTACAAGCTCTAGAAATCACTTTCCGCTTCGTTTCGACGGTTTTATCC GACAAAAGACCGTACGCGAACCGGAGAGAATGGACACGGAGGATCGAGTCACTCACCACCTCTCAGATCGAGTTAATCGCGTCCATCATCGAAGATGAAG CAGAAGATAGCACAACGCGTGGCACGGCTCCAATCGCGGACTTGAGCTCAACGGAAGGTGTTCTGGTTAGAGATGGGAGTTACGCGGAGGTATGGAAGGT TCCGGGCGAAACCACGGTGGTCAATAAAACCAGCGAGGCAAGCCTGCTCCCTAGGCTCGCCACGTGGCAGACATCTGAAGACGTAGCACAGAAAATCCTG TACTCCATCGAGTGCGAGATGAGACGGTGCCCATACACACTAGGACTCGGCGAGCCAAACCTTAACGGAAAACCAACCCTGGAATACGACACTGTTTGCA GGCCGAACGAAATCCACGCCCTCAAAAAGAGTCCGTACGATCACATCAAGAACCAGGAAAACCAATCGGTGTACACCACGCATCAAATCCTAGAGTCATG GATACATGTGGCAAAACAAATTATCCAGCGCGTAACAGAAAGAATTGGAAGCAAAGAATTTTCAAAAGCATCAAATGACTGCTATTTAATCGAGAGAATC TGGAAACTTCTAGCAGAAATTGAAGACTTGCATCTACTAATGGATCCAGATGATTTTTTGAGACTTAAAAATCAGTTACAGATGCGATCATTAGACGAAA ACTCTCCGTATTGTTTTAGATCGAGGGAGTTGGTGGAGATAACGAAATCGTGCAAGGAACTGAAGCACAAGGTGCCGGAAGTTTTGGGTGTTGAAGTGGA CCCAAAAGGTGGGCCCAGGATACAAGAAGCAGCCATGAGGTTGTACAGTGAAAAAAAGGAGTTTCAGAAGGTTTATTTGCTTCAGGCTTTGCAGGCAATT GAGGGTGCTCTAAAGAGGTTCTTTTATGCGTATCAACAGGTGCTAGTTGTTGCTATAGGGAGTTTGGAGGCCAAAGGGAATGGGGTTTTGGTGAGTTCAG AGAGTTGTGACTCGTTGACTCAGTTGTTCCTTGAACCTACTTATTTTCCTAGTTTGGATGCTGCTAAGACTTTTCTGGGAGAGTCTTGGAGTCATGAACA ACCTAATAGGGTGGAGAGACGGAGTCGGAGGATGCAGTGA
AA sequence Show only first row Show all	>Potri.008G066000.1 pacid=42807410 polypeptide=Potri.008G066000.1.p locus=Potri.008G066000 ID=Potri.008G066000.1.v4.1 annot-version=v4.1 MIDLDWKAKMVSSDPPNKPPRLSSKLHVSIPAIQFRGISNTYPIPASDSVCSAYEYYLRLPELRKLWNRKEFSNWKTESILKPALQALEITFRFVSTVLS DKRPYANRREWTRRIESLTTSQIELIASIIEDEAEDSTTRGTAPIADLSSTEGVLVRDGSYAEVWKVPGETTVVNKTSEASLLPRLATWQTSEDVAQKIL YSIECEMRRCPYTLGLGEPNLNGKPTLEYDTVCRPNEIHALKKSPYDHIKNQENQSVYTTHQILESWIHVAKQIIQRVTERIGSKEFSKASNDCYLIERI WKLLAEIEDLHLLMDPDDFLRLKNQLQMRSLDENSPYCFRSRELVEITKSCKELKHKVPEVLGVEVDPKGGPRIQEAAMRLYSEKKEFQKVYLLQALQAI EGALKRFFYAYQQVLVVAIGSLEAKGNGVLVSSESCDSLTQLFLEPTYFPSLDAAKTFLGESWSHEQPNRVERRSRRMQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40000		ATHSPRO2	ARABIDOPSIS ORTHOLOG OF SUGAR ...		Potri.008G066000 [exp]	0	1
AT5G67080		MAPKKK19	mitogen-activated protein kina...		Potri.005G139300 [exp]	7.14	0.8794
AT2G40000		ATHSPRO2	ARABIDOPSIS ORTHOLOG OF SUGAR ...		Potri.010G191300 [exp]	7.93	0.8761
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Potri.004G200400 [exp]	8.24	0.8765
AT3G14470			NB-ARC domain-containing disea...		Potri.017G136400 [exp]	8.71	0.8194
AT1G27730	C2H2ZnF	ZAT10, STZ	salt tolerance zinc finger (.1...		Potri.001G295500 [exp]	10.58	0.8740
AT5G43470		HRT, RCY1, RPP8	RECOGNITION OF PERONOSPORA PAR...		Potri.003G149800 [exp]	11.22	0.8673
AT3G14470			NB-ARC domain-containing disea...		Potri.017G133600 [exp]	12.24	0.8706
AT5G57123			unknown protein		Potri.006G073400 [exp]	18.65	0.8519
AT3G05200		ATL6	RING/U-box superfamily protein...		Potri.005G036800 [exp]	19.79	0.8655
AT1G25560	AP2_ERF	EDF1, TEM1	TEMPRANILLO 1, ETHYLENE RESPON...		Potri.010G129200 [exp]	21.21	0.8600	RAV2.2,RAV1

Compare expression of checked genes

Potri.008G066000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.