Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40010 510 / 0 Ribosomal protein L10 family protein (.1) AT3G09200 507 / 0 Ribosomal protein L10 family protein (.1.2) AT3G11250 505 / 0 Ribosomal protein L10 family protein (.1) AT1G25260 62 / 7e-11 Ribosomal protein L10 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G191200 [exp] 543 / 0 AT3G09200 505 / 0.0 Ribosomal protein L10 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040214 [exp] 489 / 1e-175 AT2G40010 484 / 6e-174 Ribosomal protein L10 family protein (.1) Lus10028276 [exp] 488 / 4e-175 AT2G40010 486 / 1e-174 Ribosomal protein L10 family protein (.1) Lus10009887 [exp] 489 / 5e-175 AT3G11250 491 / 7e-176 Ribosomal protein L10 family protein (.1) Lus10014841 [exp] 487 / 8e-175 AT3G11250 489 / 6e-176 Ribosomal protein L10 family protein (.1) Lus10009447 [exp] 446 / 2e-159 AT3G09200 431 / 1e-153 Ribosomal protein L10 family protein (.1.2) Lus10001549 [exp] 290 / 7e-96 AT2G40010 298 / 6e-99 Ribosomal protein L10 family protein (.1) Lus10043280 [exp] 55 / 2e-08 AT1G25260 351 / 3e-124 Ribosomal protein L10 family protein (.1) Lus10019424 [exp] 56 / 3e-08 AT2G26830 471 / 1e-161 embryo defective 1187, Protein kinase superfamily protein (.1) Lus10030073 [exp] 49 / 2e-06 AT1G25260 343 / 5e-121 Ribosomal protein L10 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00428 [poplar] [flax] Ribosomal_60s 60s Acidic ribosomal protein PF00466 [poplar] [flax] Ribosomal_L10 Ribosomal protein L10
Representative CDS sequence Show only first row Show all	>Potri.008G066300.1 pacid=42808260 polypeptide=Potri.008G066300.1.p locus=Potri.008G066300 ID=Potri.008G066300.1.v4.1 annot-version=v4.1 ATGGTGAACAAACTATCAAAGGCTGATAAGAAAATCGCTTACGACGCTAAGCTGTGCCAATTACTGGATGAGTACAGCCAGATCTTGATTGCAGCAGCTG ATAATGTTGGGTCTACCCAGCTGCAAAATATCAGGAGGGGTCTTAGAGGTGACTCTGTGGTGCTCATGGGAAAGAATACCATGATGAAGAGGTCTGTTCG GATCCATTCTGAAAAAACTGGAAACAAAACTTTCCTTAACCTTATCCCTCTCCTTCAGGGTAATGTCGGGTTGATTTTCACTAAAGGTGATCTCAAGGAA GTGAGCGAGGAGGTTGCGAAGTATAAGGTTGGAGCTCCTGCTCGTGTTGGTCTGGTTGCCCCAATTGATGTTGTTGTACCTCCTGGCAACACAGGGCTTG ATCCATCCCAGACCTCTTTCTTCCAGGTGCTCAATATTCCAACCAAGATTAACAAGGGTACAGTCGAAATTATCACCCCAGTCGAGCTGATCAAGAAGGG TGACAAGGTTGGCTCTTCTGAGGCTGCTCTACTGGCAAAGCTTGGCATTAGGCCATTTTCTTATGGTCTGGTTGTCTTGTCTGTTTATGACAATGGCTCT GTCTTCAGCCCCACTGTGCTTGACCTGACAGAGGATGACCTTGTTGAGAAGTTTGCTACTGGTATCACTATGATCACCTCCTTGTCACTGGCCATCTCGT ACCCAACCCTTGCTGCTGCACCACACATGTTCATCAATGCCTACAAGAATATTCTTTCTGTTGCAGTTGCAACTGAATATTCTTATCCTCAAGCAGAGGA AGTGAAAGAGTTCCTGAAGGATCCTAGCAAGTTTGCTGTCGCAGCAGCTCCTGCCGCCGCCGCCGCCGCCGCTCCTGGTGGTGCCCCAGCTGCTGCCAAG GAAGAGGAGAAGAAGGAAGAGCCAGCAGAAGAGTCCGATGATGACATGGGTTTCAGCCTTTTTGACTAA
AA sequence Show only first row Show all	>Potri.008G066300.1 pacid=42808260 polypeptide=Potri.008G066300.1.p locus=Potri.008G066300 ID=Potri.008G066300.1.v4.1 annot-version=v4.1 MVNKLSKADKKIAYDAKLCQLLDEYSQILIAAADNVGSTQLQNIRRGLRGDSVVLMGKNTMMKRSVRIHSEKTGNKTFLNLIPLLQGNVGLIFTKGDLKE VSEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGS VFSPTVLDLTEDDLVEKFATGITMITSLSLAISYPTLAAAPHMFINAYKNILSVAVATEYSYPQAEEVKEFLKDPSKFAVAAAPAAAAAAAPGGAPAAAK EEEKKEEPAEESDDDMGFSLFD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40010			Ribosomal protein L10 family p...		Potri.008G066300 [exp]	0	1
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Potri.015G112900 [exp]	1.73	0.9408	P40.4
AT3G20000		TOM40	translocase of the outer mitoc...		Potri.007G000200 [exp]	3.16	0.9220	Pt-TOM40.1
AT1G18080		RACK1A_AT, ATAR...	RECEPTOR FOR ACTIVATED C KINAS...		Potri.015G041600 [exp]	3.16	0.9492	Pt-GBF1.2
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Potri.017G100800 [exp]	4.47	0.9314
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Potri.012G117600 [exp]	5.74	0.9176
AT3G04840			Ribosomal protein S3Ae (.1)		Potri.010G083200 [exp]	7.00	0.9277	RS3.1
AT1G28395			unknown protein		Potri.011G057300 [exp]	7.74	0.8953
AT3G09630			Ribosomal protein L4/L1 family...		Potri.016G084400 [exp]	7.74	0.9383	Pt-RPL4.2
AT5G25757			RNA polymerase I-associated fa...		Potri.006G241300 [exp]	8.83	0.9138
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Potri.014G058500 [exp]	9.16	0.8832	BSTCP.1

Compare expression of checked genes

Potri.008G066300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.