Plant FIBer expression Database

Potri.008G066500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G05740 611 / 0 ATEGY2 ethylene-dependent gravitropism-deficient and yellow-green-like 2 (.1.2.3)
AT5G35220 154 / 1e-40 EGY1 ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1, Peptidase M50 family protein (.1)
AT1G17870 83 / 1e-16 ATEGY3 ethylene-dependent gravitropism-deficient and yellow-green-like 3 (.1)
AT5G35210 78 / 8e-15 metalloendopeptidases;zinc ion binding;DNA binding (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G064700
[exp]
147 / 7e-38 AT5G35220 766 / 0.0 ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1, Peptidase M50 family protein (.1)
Potri.001G289700
[exp]
92 / 1e-19 AT1G17870 755 / 0.0 ethylene-dependent gravitropism-deficient and yellow-green-like 3 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022806
[exp]
659 / 0 AT5G05740 644 / 0.0 ethylene-dependent gravitropism-deficient and yellow-green-like 2 (.1.2.3)
Lus10011873
[exp]
652 / 0 AT5G05740 648 / 0.0 ethylene-dependent gravitropism-deficient and yellow-green-like 2 (.1.2.3)
Lus10005688
[exp]
135 / 6e-34 AT5G35220 776 / 0.0 ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1, Peptidase M50 family protein (.1)
Lus10020304
[exp]
131 / 2e-32 AT5G35220 781 / 0.0 ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1, Peptidase M50 family protein (.1)
Lus10006140
[exp]
93 / 9e-20 AT1G17870 801 / 0.0 ethylene-dependent gravitropism-deficient and yellow-green-like 3 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0126 Peptidase_MA PF02163 Peptidase_M50 Peptidase family M50
Representative CDS sequence
>Potri.008G066500.1 pacid=42807332 polypeptide=Potri.008G066500.1.p locus=Potri.008G066500 ID=Potri.008G066500.1.v4.1 annot-version=v4.1
ATGCTAAAAATGAGTGTTTCGGCGACATTTCGTGGCAATTTTAGTTCCTTATTGATACCACAGAGCAGCTATTGTCCTTGCGATTATCGTCCACGCCACA
TTTTAGCTTCTTCTTCTGTTATTTCTTGGCGAAAACGATGTCGTACAAGAGATTTCAAGTTGTACCAGGTTTCAGAGTTTTGTGAGAGGAGAGAAATTAT
TGTATGTAGAGCTGCAGAGACAGAGATTGAACCGGATAATAGCAACAATGATAATAAGGAAAAAGAAGTGCATGAAGGAGGAGAGGAGCATCCTACCATA
GATTCCGTTGGCCAAACTGACGACCAACCTGATTCTCAGCCTACAATTCTAAATCAAATAAATGGCGGGGAAATTACTACTGGAGGTGGCACCCAGGAAG
CTGATGATGAAGTTGTCAGTGGGTCCCCTCTGCCAGGTGTGAAGCCCCAGCAACTGGATGAATCAATCAGGATTCCTAAAGAAACAATTGATATTCTCAG
GAACCAAGTGTTTGGCTTTGATACATTTTTTGTGACAAGCCAGGAGCCATATGAGGGTGGAGTCTTGTTTAAAGGAAACCTGCGAGGCCAGGCAGCTAAA
AGCTATGAAAAATTAACGAACAGGATGCAGAATAAACTTGGGGATGAGTATAAGATTTTCCTCCTAGTTAATCCGGAGGATGATAAACCAGTGGCAGTTG
TGGTTCCAAGAAAGACCCTTCAGCCAGAAACGACAGCTGTCCCAGAGTGGTTTGCAGCTGGCGCTTTTGGACTGGTTACAATTTTTACATTACTTCTCCG
GAATGTGCCTGCATTACAGTCAAACTTATTATCGACTTTTGACAATCCTGAGCTGTTGATGGATGGGCTACCCGGAGCCCTTGTGACTGCACTTGTTCTG
GGGGCACATGAATTGAGCCACATACTGGTTGCAAAAAGTAATGAAGTTAAGCTTGGGGTGCCATACTTTGTTCCAAGTTGGCAGATAGGTTCTTTCGGTG
CTATCACAAGGATAACAAGTATCGTGCCCAAACGTGAAGTTCTTCTGAAAGTTGCAGTGGCAGGACCTTTAGCGGGGTTTTCCTTGGGTCTTGTTCTTTT
CCTTTTGGGCTTCATCTTACCACCTAGAGATGGTATTGGTCTTGTTGTTGACGCTTCTGTTTTTCACGAGTCATTTCTTGCTGGGGGTATTGCTAAACTT
CTGCTAGGTGATGTACTCAAGGAAGGCACTCCCATATCTGTTAATCCACTGGTGATATGGGCGTGGGCTGGACTTCTTATTAATGCCATCAACAGCATCC
CTGCTGGAGAGCTTGATGGTGGGCGAATTTCTTTTGCTATCTGGGGAAGGAAGGCTTCAGCTCGCTTCACTGGTTTCTCCATTGTCTTGCTTGGACTATC
CTCACTACTTAACGATGTGGCTTTTTTCTGGGTAGTTCTAATATTCTTCTTACAAAGGGGGCCAATTTCTCCAGTTTCTGAAGAGATAAGTGATCCCGAG
AATAAGTATGTTGCCCTTGGACTCTTAGTTTTGGTCTTAGGATTGCTGGTGTGCCTACCATACCCCTTCCCTTTTACAGATGAAACCGTTACAAGTTTCA
CAAGTAATGCCATTTCAAGTCTCTAG
AA sequence
>Potri.008G066500.1 pacid=42807332 polypeptide=Potri.008G066500.1.p locus=Potri.008G066500 ID=Potri.008G066500.1.v4.1 annot-version=v4.1
MLKMSVSATFRGNFSSLLIPQSSYCPCDYRPRHILASSSVISWRKRCRTRDFKLYQVSEFCERREIIVCRAAETEIEPDNSNNDNKEKEVHEGGEEHPTI
DSVGQTDDQPDSQPTILNQINGGEITTGGGTQEADDEVVSGSPLPGVKPQQLDESIRIPKETIDILRNQVFGFDTFFVTSQEPYEGGVLFKGNLRGQAAK
SYEKLTNRMQNKLGDEYKIFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTIFTLLLRNVPALQSNLLSTFDNPELLMDGLPGALVTALVL
GAHELSHILVAKSNEVKLGVPYFVPSWQIGSFGAITRITSIVPKREVLLKVAVAGPLAGFSLGLVLFLLGFILPPRDGIGLVVDASVFHESFLAGGIAKL
LLGDVLKEGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRISFAIWGRKASARFTGFSIVLLGLSSLLNDVAFFWVVLIFFLQRGPISPVSEEISDPE
NKYVALGLLVLVLGLLVCLPYPFPFTDETVTSFTSNAISSL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G05740 ATEGY2 ethylene-dependent gravitropis... Potri.008G066500
[exp]
0 1
AT1G04920 ATSPS3F sucrose phosphate synthase 3F ... Potri.001G317600
[exp]
1.00 0.9802
AT3G10130 SOUL heme-binding family prote... Potri.016G098500
[exp]
1.41 0.9742
Potri.003G135200
[exp]
2.82 0.9706
AT5G22800 EMB86, EMB263, ... EMBRYO DEFECTIVE 86, EMBRYO DE... Potri.009G141300
[exp]
4.24 0.9732
AT3G18440 ATALMT9 aluminum-activated malate tran... Potri.001G097300
[exp]
4.79 0.9571
AT3G52180 ATSEX4, SEX4, A... STARCH-EXCESS 4, DUAL-SPECIFIC... Potri.008G029300
[exp]
4.89 0.9626
AT3G19170 ATPREP1, ATZNMP presequence protease 1 (.1.2) Potri.004G142300
[exp]
5.47 0.9687
AT5G57960 GTP-binding protein, HflX (.1) Potri.002G031100
[exp]
7.41 0.9706
AT1G16880 ACR11 ACT domain repeats 11, uridyly... Potri.008G010400
[exp]
8.36 0.9645
AT1G64110 DAA1 DUO1-activated ATPase 1, P-loo... Potri.003G133700
[exp]
8.83 0.9566

Potri.008G066500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.