Plant FIBer expression Database

Pt-ASA1.1,ASA%2C,pseudogene (Potri.008G066600) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-ASA1.1,ASA%2C,pseudogene
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G55870 213 / 2e-68 ADC synthase superfamily protein (.1)
AT5G05730 213 / 4e-67 JDL1, WEI2, TRP5, AMT1, ASA1 WEAK ETHYLENE INSENSITIVE 2, TRYPTOPHAN BIOSYNTHESIS 5, JASMONATE-INDUCED DEFECTIVE LATERAL ROOT 1, A-METHYL TRYPTOPHAN RESISTANT 1, anthranilate synthase alpha subunit 1 (.1.2)
AT2G29690 206 / 3e-64 ATHANSYNAB, ASA2 anthranilate synthase 2 (.1)
AT2G28880 66 / 1e-13 ADCS, EMB1997 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G190600
[exp]
243 / 9e-79 AT5G05730 835 / 0.0 WEAK ETHYLENE INSENSITIVE 2, TRYPTOPHAN BIOSYNTHESIS 5, JASMONATE-INDUCED DEFECTIVE LATERAL ROOT 1, A-METHYL TRYPTOPHAN RESISTANT 1, anthranilate synthase alpha subunit 1 (.1.2)
Potri.009G044300
[exp]
181 / 4e-55 AT2G29690 808 / 0.0 anthranilate synthase 2 (.1)
Potri.010G221500
[exp]
70 / 9e-15 AT2G28880 1016 / 0.0 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016945
[exp]
215 / 3e-68 AT2G29690 872 / 0.0 anthranilate synthase 2 (.1)
Lus10014842
[exp]
209 / 7e-66 AT5G05730 864 / 0.0 WEAK ETHYLENE INSENSITIVE 2, TRYPTOPHAN BIOSYNTHESIS 5, JASMONATE-INDUCED DEFECTIVE LATERAL ROOT 1, A-METHYL TRYPTOPHAN RESISTANT 1, anthranilate synthase alpha subunit 1 (.1.2)
Lus10014830
[exp]
209 / 8e-66 AT2G29690 875 / 0.0 anthranilate synthase 2 (.1)
Lus10009888
[exp]
206 / 1e-64 AT5G05730 755 / 0.0 WEAK ETHYLENE INSENSITIVE 2, TRYPTOPHAN BIOSYNTHESIS 5, JASMONATE-INDUCED DEFECTIVE LATERAL ROOT 1, A-METHYL TRYPTOPHAN RESISTANT 1, anthranilate synthase alpha subunit 1 (.1.2)
Lus10036525
[exp]
68 / 4e-14 AT2G28880 1026 / 0.0 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1)
Lus10041403
[exp]
67 / 9e-14 AT2G28880 1078 / 0.0 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00425 Chorismate_bind chorismate binding enzyme
Representative CDS sequence
>Potri.008G066600.1 pacid=42807579 polypeptide=Potri.008G066600.1.p locus=Potri.008G066600 ID=Potri.008G066600.1.v4.1 annot-version=v4.1
ATGATCACACCTTGCTGGGATGCCCTCCGTGCTGCATTGCCTGTCGGAACTGTCAGTGGGGCACCAAAGGTAAAGGCAATGGAATTGATTGACCAAATGG
AGGTGTCGAGGCGTGGTCCTTACAGTGGAGGATTAGGAGGGGTTTCCTTCACTGGTGATATGGACATTGCACTGGCTCTTAGGACCATGGTATTCCCAAC
GGAAACTCAATACAACACAATGTACTCGTATAAGGATGCTCAGCTACGCCGTGAATGGATTGCTGGTGCTGGTATAGTTGCAGACAGTGTACCCGAAGAC
GAGCACCGTGAGTGCCAGAACAAAGTTGCTGGGCTTGCTCGCGCCATCGACTTGGCTGAGTTAACTTTTGTTAACAAGTCATGA
AA sequence
>Potri.008G066600.1 pacid=42807579 polypeptide=Potri.008G066600.1.p locus=Potri.008G066600 ID=Potri.008G066600.1.v4.1 annot-version=v4.1
MITPCWDALRAALPVGTVSGAPKVKAMELIDQMEVSRRGPYSGGLGGVSFTGDMDIALALRTMVFPTETQYNTMYSYKDAQLRREWIAGAGIVADSVPED
EHRECQNKVAGLARAIDLAELTFVNKS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G55870 ADC synthase superfamily prote... Potri.008G066600
[exp]
0 1 Pt-ASA1.1,ASA%2C,pseudogene
Potri.012G007445
[exp]
3.00 0.9927
Potri.012G007866
[exp]
4.89 0.9824
Potri.005G010551
[exp]
6.85 0.9608
Potri.012G008845
[exp]
6.92 0.9804
Potri.001G259224
[exp]
9.48 0.9798
AT4G25770 alpha/beta-Hydrolases superfam... Potri.018G096035
[exp]
9.53 0.9201
AT1G07080 Thioredoxin superfamily protei... Potri.012G107300
[exp]
10.39 0.9734
AT1G08650 ATPPCK1, PPCK1 phosphoenolpyruvate carboxylas... Potri.010G071400
[exp]
13.03 0.9806
Potri.003G013856
[exp]
14.49 0.9775
AT1G16770 unknown protein Potri.004G169900
[exp]
16.52 0.9666

Potri.008G066600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.