Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40060 190 / 7e-60 CLC2 clathrin light chain 2, Clathrin light chain protein (.1) AT3G51890 179 / 1e-55 Clathrin light chain protein (.1) AT2G20760 161 / 1e-47 Clathrin light chain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G190400 [exp] 326 / 2e-113 AT2G40060 215 / 1e-69 clathrin light chain 2, Clathrin light chain protein (.1) Potri.016G114700 [exp] 203 / 7e-65 AT2G40060 217 / 2e-70 clathrin light chain 2, Clathrin light chain protein (.1) Potri.011G049500 [exp] 169 / 7e-51 AT2G20760 201 / 2e-62 Clathrin light chain protein (.1) Potri.019G102000 [exp] 162 / 1e-47 AT2G20760 212 / 2e-65 Clathrin light chain protein (.1) Potri.004G040100 [exp] 156 / 6e-46 AT2G20760 216 / 7e-68 Clathrin light chain protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004389 [exp] 198 / 4e-63 AT2G40060 220 / 9e-72 clathrin light chain 2, Clathrin light chain protein (.1) Lus10030401 [exp] 192 / 1e-60 AT2G40060 197 / 2e-62 clathrin light chain 2, Clathrin light chain protein (.1) Lus10040187 [exp] 188 / 5e-59 AT2G40060 211 / 3e-68 clathrin light chain 2, Clathrin light chain protein (.1) Lus10011194 [exp] 174 / 7e-53 AT2G20760 235 / 2e-75 Clathrin light chain protein (.1) Lus10018480 [exp] 171 / 1e-51 AT2G20760 239 / 4e-77 Clathrin light chain protein (.1) Lus10018582 [exp] 142 / 2e-40 AT2G20760 195 / 2e-59 Clathrin light chain protein (.1) Lus10039815 [exp] 137 / 9e-39 AT2G20760 189 / 2e-57 Clathrin light chain protein (.1) Lus10037839 [exp] 0 / 1 AT2G40060 135 / 4e-42 clathrin light chain 2, Clathrin light chain protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01086 [poplar] [flax] Clathrin_lg_ch Clathrin light chain
Representative CDS sequence Show only first row Show all	>Potri.008G066800.1 pacid=42806143 polypeptide=Potri.008G066800.1.p locus=Potri.008G066800 ID=Potri.008G066800.1.v4.1 annot-version=v4.1 ATGTCCGCGTTTGCCGAGTCGTTCGCACAAAGTGAGTCAACTCGTCCGTTTGACGACGACGATTCCTACGCAGGTTACAATTCACAGCCTTTCGATGATT CATTCGCCACCGGCGACGATGTTTTGGAGTCGCAGCCACCGATCTACGGCCAGTTCTCACCTCAAGAGAACGGAGAGTTTGGTGGATCGGAGGGTCGGAT TTCGCTGTCACCGTCGGAGACGGAGGCTGAGCAGGGACTTGCTCTCATAGAATGGAGAAGGCAAAATGTGATACTATTGGAGGACAAGGAGAGGAGGGAA AAGGAGGTATTGAGCCAAATAATCAAGGAAGCTGAAGATTACAAAGTTGAATTTTACAAGAAGAGGCAGTTCACTTGTGAGAATAATAAAACCACTAACA GGGAAAAAGAGAAGTTATTTCTGGTCAACCAAGAAAAATTCCATGCTGAGGCTGATAAGAATTATTGGAAGTCAATTGCAGAGCTCATTCCTAATGAAGT GCCAGCTATAGAGAAGAGGAAAGGGAAGAAAGATCAGGATAAGAAGCCTGCTATTGTTGTGATCCAAGGCCCAAAGCCTGGGAAACCGACTGAACTCTCA AGGATGCGGCAAATACTATTGAAATTGAAGCATGATACACCTCCTCACCTGAAGCATTCCCCAGCAGCAGCATCATCCACTGCTAATGCTGCTAAAACCT GTGATGCCACAGGAGTAACTACTTCCACCAAGGCTAATACTGTGGTGACTGCTCCTGAGCCTGTAGCTGTTGCTTGA
AA sequence Show only first row Show all	>Potri.008G066800.1 pacid=42806143 polypeptide=Potri.008G066800.1.p locus=Potri.008G066800 ID=Potri.008G066800.1.v4.1 annot-version=v4.1 MSAFAESFAQSESTRPFDDDDSYAGYNSQPFDDSFATGDDVLESQPPIYGQFSPQENGEFGGSEGRISLSPSETEAEQGLALIEWRRQNVILLEDKERRE KEVLSQIIKEAEDYKVEFYKKRQFTCENNKTTNREKEKLFLVNQEKFHAEADKNYWKSIAELIPNEVPAIEKRKGKKDQDKKPAIVVIQGPKPGKPTELS RMRQILLKLKHDTPPHLKHSPAAASSTANAAKTCDATGVTTSTKANTVVTAPEPVAVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40060		CLC2	clathrin light chain 2, Clathr...		Potri.008G066800 [exp]	0	1
AT5G43960			Nuclear transport factor 2 (NT...		Potri.014G192900 [exp]	1.41	0.9076
AT5G61030		GR-RBP3	glycine-rich RNA-binding prote...		Potri.012G061600 [exp]	2.00	0.9112
AT4G05160			AMP-dependent synthetase and l...		Potri.017G112800 [exp]	3.00	0.8894
AT5G47320		RPS19	ribosomal protein S19 (.1)		Potri.013G129600 [exp]	4.24	0.8749
AT5G65380			MATE efflux family protein (.1...		Potri.005G160700 [exp]	4.47	0.8783
					Potri.018G111650 [exp]	4.58	0.8713
AT1G44835			YbaK/aminoacyl-tRNA synthetase...		Potri.005G175900 [exp]	5.09	0.8225
AT5G12240			unknown protein		Potri.009G069000 [exp]	6.70	0.8757
AT2G16370		THY-1	thymidylate synthase 1 (.1)		Potri.005G230700 [exp]	9.16	0.8210	DHFR-TS-3b
AT3G13580			Ribosomal protein L30/L7 famil...		Potri.008G008000 [exp]	10.24	0.8330	RPL7.3

Compare expression of checked genes

Potri.008G066800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.