Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40070 321 / 1e-102 unknown protein AT3G09000 206 / 4e-59 proline-rich family protein (.1) AT5G01280 132 / 4e-33 unknown protein AT2G38160 93 / 1e-20 unknown protein AT3G08670 71 / 2e-12 unknown protein AT1G27850 57 / 3e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G190300 [exp] 442 / 1e-149 AT2G40070 368 / 6e-121 unknown protein Potri.016G114900 [exp] 254 / 6e-77 AT2G40070 352 / 7e-114 unknown protein Potri.010G177000 [exp] 92 / 1e-19 AT2G40070 82 / 9e-17 unknown protein Potri.016G139500 [exp] 83 / 2e-16 AT3G08670 245 / 2e-73 unknown protein Potri.006G110700 [exp] 75 / 7e-14 AT3G08670 251 / 1e-75 unknown protein Potri.008G178600 [exp] 69 / 9e-12 AT1G27850 567 / 0.0 unknown protein Potri.010G056200 [exp] 64 / 3e-10 AT1G27850 240 / 1e-64 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030402 [exp] 334 / 3e-107 AT2G40070 561 / 0.0 unknown protein Lus10040188 [exp] 328 / 3e-105 AT2G40070 533 / 0.0 unknown protein Lus10037838 [exp] 328 / 6e-105 AT2G40070 551 / 0.0 unknown protein Lus10004390 [exp] 317 / 6e-105 AT2G40070 321 / 5e-107 unknown protein Lus10002493 [exp] 188 / 2e-53 AT2G40070 300 / 2e-95 unknown protein Lus10004824 [exp] 181 / 2e-50 AT3G09000 286 / 3e-90 proline-rich family protein (.1) Lus10027767 [exp] 152 / 1e-38 AT2G40070 288 / 5e-86 unknown protein Lus10035528 [exp] 139 / 2e-34 AT2G40070 280 / 4e-83 unknown protein Lus10021382 [exp] 84 / 9e-17 AT3G08670 432 / 4e-145 unknown protein Lus10025209 [exp] 83 / 2e-16 AT3G08670 398 / 6e-131 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G066900.1 pacid=42806400 polypeptide=Potri.008G066900.1.p locus=Potri.008G066900 ID=Potri.008G066900.1.v4.1 annot-version=v4.1 ATGAATCGTAGTTTTAGGGCACAGGACTCGCAAATGCAAATGCAAGCAGCAGTGGTGAAGCAAAGACAGCAGTTAAGAGCTAAAATGATGAAAGAAAAAG AAGAAGAGCTTGCTTTGTTTTTAGAAATGAAGAAGCGTGAAAAAGAGCAGAATAATTTGTTTTTAATCAACAATACTGAAGATTTTGAAGCGCCATTTGG ATCAAGACATGGAACTTCTCCGATATTTAATATTTCTTCTTCAACGCCAGCGAGGAAAACAGGAGCTGATGATTTTCTCAATTCCGAGAATGATAAACAT GACTATGACTGGCTCCTAACTCCTCCTGGTACCCCTCTTTTTCCTTCTTTGGAGGTGGAATCACAAAAGACCATTATGAGTCAGATTGGTACTCCAAAGG CCTGCCCGACTGCTCTGAAATCTAGACTAGCTAGCCCTCAGCCAGATCCTGTTCGAAGGGGCAACTTGGTATCCAAACAACCCGCTTCCTCCCCTGGGTT GAACTCTTCAGGTGCAGCAATGCGCAGGCCCTCATCATCTGGTGGTCCAGGATCTAGGCCTTCAACACCAACTGGACGCCCCACGCTGACTACAGGTTCT AAACCTTCAAGATCATCAACACCTACCTCTCGGGCCACTCTGTCCTCGTCTAAGCCCACAGTTTCCGCAGCTAAGCCAACTGTCTCTGCAGCTAAATCGA CTACTTCTACAATGAAGTCCACAGTTCCTGCAAGATCCTCAACACCATCAAGGTCAACACGATCTTCAACGCCGACTGCAAGGCCCTCTATACCCCCATC TAAGTCGACATCAAGGGCTGCAACCCCAACTCGACGGCCATCCACTCCATCTAGTTCACCAAGCCTATCTGCTCCTCCTGTTAAGTCATCATCTTTAGTT ACCAAGTCAGCTCCTACAGTTACCAAGTCAGCTCCCACAGTTGCTAGAAATCCTGTCCCATCACGTGGCTCTTCGCCAACAGTGAAATCTAGGCCATGGA AGCCCTCAGAGATGCCTGGTTTTTCACTTGATGCTCCTCCAAATTTAAGAACTACAGTACCTGAACGGCCACTTTCAGCTACTAGGGGTAGGCCTGGAGC ACCTAGTGCTCGATCTTCCTCTGTTGAGCCTACTCCTAATGGACGTCCAAGACGACAATCATGCTCTCCATCAAGAGGACGTGGCCCCAATGGCATTATG CACCCCAGTGGGAGTTCTGTTCCTGCATTTAGTCGTGGGCGTTCTAAAATTAATGACAATGTTAGCCCTGTCGTTATTGGAACCAAAATGGTTGACAGAG TGATAAATATGCGAAAGCTGGCACCTCCCAAGCAAGATGACAAACATTCTCCTCGTTTTCTGACTGGGAAGTCTTCATCTCCAGACAGCTCAGGCTTTGG AAGAACACTCTCAAAGAAATCTTTGGATATGGCCATTAGACATATGGACATAAGGCGCACCATTCCTGGTAATTTACGGCCTTTGATGACCAATATCCCA GCATCTTCGATGTACAGTGTGAGATCAGGGCATACAAGAAGCAGAACAGTTAGTGTTTCAGACTCTCCGCTTGCCACGAGCAGTAATGCTAGTTCAGAAG TGAGTGTCAACAACAATGGTCTTTGTTTGGATGGGATTGAATTAGAAGATGATATTGGCAGTGGGAGAGGTGGGCGTTCTCCTCTACGAGGCAGGTGA
AA sequence Show only first row Show all	>Potri.008G066900.1 pacid=42806400 polypeptide=Potri.008G066900.1.p locus=Potri.008G066900 ID=Potri.008G066900.1.v4.1 annot-version=v4.1 MNRSFRAQDSQMQMQAAVVKQRQQLRAKMMKEKEEELALFLEMKKREKEQNNLFLINNTEDFEAPFGSRHGTSPIFNISSSTPARKTGADDFLNSENDKH DYDWLLTPPGTPLFPSLEVESQKTIMSQIGTPKACPTALKSRLASPQPDPVRRGNLVSKQPASSPGLNSSGAAMRRPSSSGGPGSRPSTPTGRPTLTTGS KPSRSSTPTSRATLSSSKPTVSAAKPTVSAAKSTTSTMKSTVPARSSTPSRSTRSSTPTARPSIPPSKSTSRAATPTRRPSTPSSSPSLSAPPVKSSSLV TKSAPTVTKSAPTVARNPVPSRGSSPTVKSRPWKPSEMPGFSLDAPPNLRTTVPERPLSATRGRPGAPSARSSSVEPTPNGRPRRQSCSPSRGRGPNGIM HPSGSSVPAFSRGRSKINDNVSPVVIGTKMVDRVINMRKLAPPKQDDKHSPRFLTGKSSSPDSSGFGRTLSKKSLDMAIRHMDIRRTIPGNLRPLMTNIP ASSMYSVRSGHTRSRTVSVSDSPLATSSNASSEVSVNNNGLCLDGIELEDDIGSGRGGRSPLRGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40070			unknown protein		Potri.008G066900 [exp]	0	1
AT2G40070			unknown protein		Potri.010G190300 [exp]	7.07	0.8898
AT2G37080		RIP3	ROP interactive partner 3 (.1)		Potri.006G131400 [exp]	11.04	0.8249
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Potri.001G302600 [exp]	11.18	0.8102
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Potri.002G146500 [exp]	12.48	0.8775
AT5G26910			unknown protein		Potri.013G010500 [exp]	14.49	0.8645
AT3G45850			P-loop containing nucleoside t...		Potri.009G026000 [exp]	14.96	0.8832
AT5G50860			Protein kinase superfamily pro...		Potri.015G103300 [exp]	15.39	0.8191
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Potri.009G027900 [exp]	15.49	0.8585	RAB8.1
AT1G73430			sec34-like family protein (.1....		Potri.010G138900 [exp]	19.44	0.8646
AT5G58000			Reticulon family protein (.1)		Potri.018G108200 [exp]	23.13	0.8684

Compare expression of checked genes

Potri.008G066900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.