Plant FIBer expression Database

Pt-ATE1.3 (Potri.008G067000) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-ATE1.3
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G05700 551 / 0 ATATE1, DLS1, ATE1 DELAYED LEAF SENESCENCE 1, arginine-tRNA protein transferase 1 (.1)
AT3G11240 528 / 0 ATATE2, ATE2 arginine-tRNA protein transferase 2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G190100
[exp]
805 / 0 AT5G05700 615 / 0.0 DELAYED LEAF SENESCENCE 1, arginine-tRNA protein transferase 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040189
[exp]
637 / 0 AT3G11240 594 / 0.0 arginine-tRNA protein transferase 2 (.1)
Lus10004392
[exp]
441 / 5e-150 AT5G05700 434 / 3e-146 DELAYED LEAF SENESCENCE 1, arginine-tRNA protein transferase 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0257 Acetyltrans PF04376 ATE_N Arginine-tRNA-protein transferase, N terminus
CL0257 Acetyltrans PF04377 ATE_C Arginine-tRNA-protein transferase, C terminus
Representative CDS sequence
>Potri.008G067000.1 pacid=42808794 polypeptide=Potri.008G067000.1.p locus=Potri.008G067000 ID=Potri.008G067000.1.v4.1 annot-version=v4.1
ATGGAAGGGAACAAGAGAAAAAGCGACGCGAGCAGCAGCAGCGGTAATAATAATCGAGGAGAACCCGTCGTTTCTGATGATGACAGCCTTAAAAGTCCCT
GTTGTTATTGCAAATCCACTGGTCTCACTAGCATCTTTCACGTTTTGCGGGCAGACAGCATAACAGTCGATGACTTCCAAGACCTTCTTGACAGAGGATG
CAGAAGATCTGGTTCTTCACTTTACAAACCTGAGATGGACAAGACCTGTTGCCCATCTTATACTATCCGTCTGAGGGCAAGTGATTTTGTTCCGTCAAAA
GAGCAACAACGAGTGTCTAGAAGAATGCAGAGGTTTGTAGATGGTGCATTGGATGTGAAAAAAGCAGTGGAAGCTATAGAGGATCCCAGTATTTGTGCCA
GTGCCTTTAATGAAGTTTCAAGCTTAGGAACAAAGGAAACCTCATCTGTTACAAAAAAGGAGAAAAATATGGGAGACCACATTACTGATTCTTTGTCAGA
ACAAGTGGACAACGTGATTTGGACATGCAGAGAAAGTGGGCAATTTCCTTGCAGTGTTCAATTACCAAAAGCTTCTGTTAAGAAGGTTTCACAAGCCAAA
AGAAAACTGCCAGTGGAAGGAGCAGAAAATCTCATGTATTCTAGCAACATTGCATTTCAAATAGCAGCAACAATAAGGCAGGCGCAATCGATTGTTAAGG
ATGCAAGTCAGAGTGCAGAAGATAACCCTCTGCCTCCAAAAATTATCGCAGAAAACTTAGCTGCTTCTTTAGATCAATTGGCGAAAACCAACGGCCTGTC
AATCAGAGCTTGCAATGGGCATATTAATTATTATACTGCAGCAACTCAAGCTTCTTCCAACAAAGATAGCCATATTGCTACGAGCTCCCAAGAATCTGCA
ACCGGGAGAAAAGGCTGCTCTTTGAGGAATAGCTCCATGCATCCTAAGAGAAAAAGGCGGAGGCTTGAGATTCGTTTGAAAAGGTCCAGTTTTGATCCAG
AAGAGTTTGCATTGTATAGAAGATATCAGATAAATGTGCATAACGATACTCCTGATGATGTTTCTGAAAGCTTATATAGAAAGTTTCTGGTTGATACTCC
TTTAGTACCTGTTCAACCATCTGGTGATGATAGAGTTCCCCCTTGTGGCTTTGGCTCCTTTCATCAGCAATATGTAATTGATGGCCACCTAGTTGCTGTT
GGTGTAATCGATATCCTTCCTAAATGTTTGTCGAGTAATTATTTGTTTTGGGATCCAGATTATGCCTTTCTATCACCAGGCAAGTATTCAGCCTTGCAAG
AAATAGGATGGGTGAAAGAGAATGAAGTCTATTGTCCCAGTCTTCAGTATTATTATCTTGGCTATTATATTCATTCCTGCAGTAAGATGAGATATAAAGC
AGCATATCGCCCATCTGAGCTTCTTTGTCCCCTTCGTTACAAGTGGGTTCCATTTGAAATAGCACAACCTTTGCTTGACAAGAAGTCATATGCTGTCTTG
TCAGATTCTGTGCTTTTACAAAATGGAGAGTCGTCACAACCTCTTGTCTCCGGAAATGTCATGGAAGAACAGGATGATGACAACTCTAACAATGTTCTGA
TAGATGATGAATGA
AA sequence
>Potri.008G067000.1 pacid=42808794 polypeptide=Potri.008G067000.1.p locus=Potri.008G067000 ID=Potri.008G067000.1.v4.1 annot-version=v4.1
MEGNKRKSDASSSSGNNNRGEPVVSDDDSLKSPCCYCKSTGLTSIFHVLRADSITVDDFQDLLDRGCRRSGSSLYKPEMDKTCCPSYTIRLRASDFVPSK
EQQRVSRRMQRFVDGALDVKKAVEAIEDPSICASAFNEVSSLGTKETSSVTKKEKNMGDHITDSLSEQVDNVIWTCRESGQFPCSVQLPKASVKKVSQAK
RKLPVEGAENLMYSSNIAFQIAATIRQAQSIVKDASQSAEDNPLPPKIIAENLAASLDQLAKTNGLSIRACNGHINYYTAATQASSNKDSHIATSSQESA
TGRKGCSLRNSSMHPKRKRRRLEIRLKRSSFDPEEFALYRRYQINVHNDTPDDVSESLYRKFLVDTPLVPVQPSGDDRVPPCGFGSFHQQYVIDGHLVAV
GVIDILPKCLSSNYLFWDPDYAFLSPGKYSALQEIGWVKENEVYCPSLQYYYLGYYIHSCSKMRYKAAYRPSELLCPLRYKWVPFEIAQPLLDKKSYAVL
SDSVLLQNGESSQPLVSGNVMEEQDDDNSNNVLIDDE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G05700 ATATE1, DLS1, A... DELAYED LEAF SENESCENCE 1, arg... Potri.008G067000
[exp]
0 1 Pt-ATE1.3
AT3G23150 ETR2 ethylene response 2, Signal tr... Potri.008G164400
[exp]
3.00 0.7759 ETR2.2
AT3G23150 ETR2 ethylene response 2, Signal tr... Potri.010G074300
[exp]
3.46 0.7319 Pt-ETR2.3
AT2G39570 ACR9 ACT domain repeats 9, ACT doma... Potri.010G207700
[exp]
5.29 0.7198
AT2G12550 NUB1 homolog of human NUB1, ubiquit... Potri.018G118143
[exp]
8.66 0.7296
AT5G59960 unknown protein Potri.009G028500
[exp]
14.24 0.7065
Potri.008G164250
[exp]
18.49 0.7044
AT5G16970 AT-AER alkenal reductase (.1) Potri.017G004032
[exp]
22.36 0.7095
Potri.008G185900
[exp]
23.83 0.5986
AT2G27830 unknown protein Potri.004G188600
[exp]
23.87 0.6678
AT2G44080 ARL ARGOS-like (.1) Potri.017G001400
[exp]
23.91 0.7012

Potri.008G067000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.