Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Lhcb8,LHCB4.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40100 420 / 5e-150 LHCB4.3 light harvesting complex photosystem II (.1.2) AT5G01530 368 / 4e-129 LHCB4.1 light harvesting complex photosystem II (.1) AT3G08940 367 / 1e-128 LHCB4.2 light harvesting complex photosystem II (.1.2) AT3G54890 139 / 7e-40 LHCA1 photosystem I light harvesting complex gene 1 (.1.2.3.4) AT1G15820 106 / 2e-27 CP24, LHCB6 light harvesting complex photosystem II subunit 6 (.1) AT4G10340 105 / 1e-26 LHCB5 light harvesting complex of photosystem II 5 (.1) AT3G61470 105 / 1e-26 LHCA2 photosystem I light harvesting complex gene 2 (.1) AT1G29920 101 / 2e-25 AB165, LHCB1.1, CAB2 LIGHT HARVESTING CHLOROPHYLL A/B-BINDING PROTEIN 1.1, chlorophyll A/B-binding protein 2 (.1) AT1G29910 101 / 2e-25 AB180, LHCB1.2, CAB3 LIGHT HARVESTING CHLOROPHYLL A/B BINDING PROTEIN 1.2, chlorophyll A/B binding protein 3 (.1) AT1G29930 101 / 2e-25 LHCB1.3, CAB140, CAB1 LIGHT-HARVESTING CHLOROPHYLL A/B-PROTEIN 1.3, CHLOROPHYLL A/B PROTEIN 140, chlorophyll A/B binding protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G115200 [exp] 377 / 1e-132 AT3G08940 449 / 4e-161 light harvesting complex photosystem II (.1.2) Potri.006G099500 [exp] 377 / 1e-132 AT3G08940 474 / 7e-171 light harvesting complex photosystem II (.1.2) Potri.008G041000 [exp] 138 / 2e-39 AT3G54890 395 / 4e-141 photosystem I light harvesting complex gene 1 (.1.2.3.4) Potri.010G221100 [exp] 130 / 1e-36 AT3G54890 392 / 4e-140 photosystem I light harvesting complex gene 1 (.1.2.3.4) Potri.006G139600 [exp] 110 / 1e-28 AT1G19150 393 / 1e-139 photosystem I light harvesting complex gene 6 (.1) Potri.003G171500 [exp] 108 / 6e-28 AT3G61470 409 / 5e-146 photosystem I light harvesting complex gene 2 (.1) Potri.001G056700 [exp] 107 / 2e-27 AT3G61470 410 / 3e-146 photosystem I light harvesting complex gene 2 (.1) Potri.003G020400 [exp] 106 / 3e-27 AT1G15820 421 / 9e-151 light harvesting complex photosystem II subunit 6 (.1) Potri.001G210000 [exp] 105 / 7e-27 AT1G15820 424 / 7e-152 light harvesting complex photosystem II subunit 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028299 [exp] 416 / 3e-148 AT2G40100 412 / 7e-147 light harvesting complex photosystem II (.1.2) Lus10040191 [exp] 410 / 4e-146 AT2G40100 412 / 1e-146 light harvesting complex photosystem II (.1.2) Lus10037836 [exp] 391 / 3e-138 AT2G40100 399 / 2e-141 light harvesting complex photosystem II (.1.2) Lus10035512 [exp] 374 / 2e-131 AT3G08940 459 / 4e-165 light harvesting complex photosystem II (.1.2) Lus10027786 [exp] 195 / 1e-61 AT3G08940 263 / 2e-88 light harvesting complex photosystem II (.1.2) Lus10040391 [exp] 136 / 8e-39 AT3G54890 371 / 1e-131 photosystem I light harvesting complex gene 1 (.1.2.3.4) Lus10023509 [exp] 134 / 3e-38 AT3G54890 367 / 3e-130 photosystem I light harvesting complex gene 1 (.1.2.3.4) Lus10011361 [exp] 106 / 4e-27 AT3G61470 414 / 6e-148 photosystem I light harvesting complex gene 2 (.1) Lus10006416 [exp] 106 / 6e-27 AT3G61470 404 / 6e-144 photosystem I light harvesting complex gene 2 (.1) Lus10015831 [exp] 104 / 1e-26 AT1G15820 384 / 2e-136 light harvesting complex photosystem II subunit 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00504 [poplar] [flax] Chloroa_b-bind Chlorophyll A-B binding protein
Representative CDS sequence Show only first row Show all	>Potri.008G067300.1 pacid=42806588 polypeptide=Potri.008G067300.1.p locus=Potri.008G067300 ID=Potri.008G067300.1.v4.1 annot-version=v4.1 ATGGCTGCAACGACTGCTGTTGCCGCGTCCTATTTTTCGGGGACCCGAACTCAATACACAAAACAAAATCCAGGAAAAATTCAAGCCCTGTTTGGATTTG GAACCAAGAAATCGCCTCCTCCTCCTCCACCAAAGAAATCCTCCCCAAAACAATTTGAAGATCGGCTTGTATGGTTCCCTGGTGCATCCCCACCTGAATG GCTTGATGGAACCATGGTTGGAGACCGCGGTTTTGACCCATTCGCTCTTGGTAAGCCCGCAGAGTACTTGCAATTTGATTTGGATTCGTTGGACCAGAAC TTGGCAAAGAATTTGGCCGGTGATGTTATTGGAGTCCGAGTAGATGCCACGGAGGTGAAACCAACACCCTTCCAGCCATACTCTGAGGTTTTTGGGCTGC AGAGGTTTAGAGAATGCGAACTTATTCATGGACGGTGGGCAATGTTGGGTACTCTTGGTGCCATTGCTGTGGAGGCTCTCACCGGTGTTGCATGGCAAGA TGCAGGAAAGGTGGAGCTGATTGAGGGGTCATCCTACCTTGGCCAGCCACTTCCTTTCTCCTTGACCACGTTGATATGGATTGAGGTGATAGTAGTTGGG TACATTGAGTTCCAAAGAAATGCAGAACTAGACCCAGAGAAAAGGCTATATCCTGGTGGCTACTTTGATCCTCTTGGCTTAGCATCTGATCCTGAAAAGA TAGAGAACCTTCAACTGGCAGAGATTAAGCATGCTAGGCTAGCTATGGTGGCCTTCCTTATATTTGGTATTCAAGCTGCTTTTACAGGAAAAGGTCCCAT TAGCTTTGTGGCTACCTTCAACAATTGA
AA sequence Show only first row Show all	>Potri.008G067300.1 pacid=42806588 polypeptide=Potri.008G067300.1.p locus=Potri.008G067300 ID=Potri.008G067300.1.v4.1 annot-version=v4.1 MAATTAVAASYFSGTRTQYTKQNPGKIQALFGFGTKKSPPPPPPKKSSPKQFEDRLVWFPGASPPEWLDGTMVGDRGFDPFALGKPAEYLQFDLDSLDQN LAKNLAGDVIGVRVDATEVKPTPFQPYSEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELIEGSSYLGQPLPFSLTTLIWIEVIVVG YIEFQRNAELDPEKRLYPGGYFDPLGLASDPEKIENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVATFNN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40100		LHCB4.3	light harvesting complex photo...		Potri.008G067300 [exp]	0	1	Lhcb8,LHCB4.1
AT3G04790		EMB3119	EMBRYO DEFECTIVE 3119, Ribose ...		Potri.005G052000 [exp]	1.73	0.9697
AT1G54780		AtTLP18.3, TLP1...	thylakoid lumen protein 18.3, ...		Potri.013G026400 [exp]	3.74	0.9750
AT4G21445			unknown protein		Potri.011G041800 [exp]	8.71	0.9700
AT3G61470		LHCA2	photosystem I light harvesting...		Potri.003G171500 [exp]	10.24	0.9671	LHCA2.1,Lhca2-2
AT1G03130		PSAD-2	photosystem I subunit D-2 (.1)		Potri.008G151600 [exp]	11.31	0.9697	PSAD1.2
AT5G64040		PSAN, PSI-N	photosystem I reaction center ...		Potri.007G105900 [exp]	13.85	0.9658
AT1G62250			unknown protein		Potri.011G006700 [exp]	16.24	0.9447
AT4G16410			unknown protein		Potri.006G017500 [exp]	17.66	0.9636
AT3G12345			unknown protein		Potri.008G047800 [exp]	20.12	0.9606
AT4G38970		FBA2	fructose-bisphosphate aldolase...		Potri.004G162400 [exp]	20.83	0.9494

Compare expression of checked genes

Potri.008G067300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.