Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05690 709 / 0 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT4G36380 356 / 3e-118 ROT3 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) AT3G50660 350 / 8e-116 PSC1, CYP90B1, CLM, SNP2, DWF4, SAV1 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) AT3G13730 329 / 4e-108 CYP90D1 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) AT1G73340 290 / 1e-92 Cytochrome P450 superfamily protein (.1) AT3G30180 286 / 7e-92 CYP85A2, BR6OX2 brassinosteroid-6-oxidase 2 (.1) AT5G38970 281 / 6e-90 ATBR6OX, CYP85A1, BR6OX1 brassinosteroid-6-oxidase 1 (.1.2.3) AT1G12740 271 / 1e-85 CYP87A2 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) AT5G45340 268 / 1e-84 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) AT4G19230 266 / 9e-84 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G189800 [exp] 872 / 0 AT5G05690 717 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.003G038200 [exp] 360 / 7e-120 AT3G13730 662 / 0.0 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) Potri.007G026500 [exp] 359 / 1e-119 AT3G50660 757 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.005G124000 [exp] 355 / 3e-118 AT3G50660 738 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.007G018400 [exp] 354 / 1e-117 AT4G36380 626 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Potri.001G200100 [exp] 353 / 1e-117 AT3G13730 663 / 0.0 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) Potri.014G171700 [exp] 318 / 8e-104 AT3G50660 408 / 1e-138 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.017G154600 [exp] 300 / 5e-97 AT1G73340 714 / 0.0 Cytochrome P450 superfamily protein (.1) Potri.003G122500 [exp] 296 / 3e-95 AT1G12740 770 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040193 [exp] 697 / 0 AT5G05690 687 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10014850 [exp] 657 / 0 AT5G05690 679 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10030404 [exp] 521 / 0 AT5G05690 531 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10028297 [exp] 490 / 1e-173 AT5G05690 472 / 2e-168 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10028345 [exp] 335 / 5e-110 AT4G36380 652 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Lus10041794 [exp] 330 / 4e-108 AT4G36380 643 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Lus10016065 [exp] 313 / 1e-101 AT3G50660 399 / 3e-134 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Lus10024016 [exp] 306 / 2e-99 AT3G50660 643 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Lus10005075 [exp] 305 / 3e-99 AT5G38970 644 / 0.0 brassinosteroid-6-oxidase 1 (.1.2.3) Lus10034377 [exp] 303 / 2e-98 AT5G38970 648 / 0.0 brassinosteroid-6-oxidase 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.008G067500.1 pacid=42808078 polypeptide=Potri.008G067500.1.p locus=Potri.008G067500 ID=Potri.008G067500.1.v4.1 annot-version=v4.1 ATGGCGGTTTCTGTTTGTCTTGTTCTCTTTATTGTTCTCCCAGCGATAGTCTTTATCGTTCACAGGAGTTCCCGGTTCCGGAGGCTCCGGCTGCCGCCGG GGAGTTTGGGTCTGCCCTTTGTTGGAGAGACTCTACAGCTGATATCTGCATACAAGACTGAGAACCCTGAACCGTTTATAGATGAGCGGGTGAACCGGTT CGGTTCGTTGTTTAAAACCCATATTTTTGGTGAACCGACCGTTTTTTCTGTTGACCCGGAAACGAACAGGTTCATTTTGCAAAATGAAGGGAAGCTGTTT GAGTGTAGTTACCCCGGTTCGATAAGCAACCTGCTGGGAAAACATTCTTTGTTGCTAATGACGGGTAATCTTCACAAAAAAATGCATTCCTTAACCATGA GTTTCGCTAACTCTTCAATCATCAGAGACCATCTCTTGGTCGATATAGACCGGTTGATCCGTCTCAATTTAGATTCTTGGTCCGACCGGGTTCTTCTCAT GGAGGAGGCCAAGAAGACTACATTTGAGTTGACAATGAAGCAGCTAATGAGCTTTGATCCATGTGAATGGACCGAGAGTCTGAGAAGAGAGTACGTGCTT GTTATTGAAGGCTTTTTCAGCGTGCCTCTACCCATCCTTTCCCCCACATACCGCAGAGCTATCAAAGCTAGGACTAAGGTGGCAGAGGCTTTGAGTTTGG TAGTGAAGCAAAGGAGGATAGAGAGTGAGTCAGGAGAGAAAAAGAAAGACATGCTTGGAGCTCTTTTAGCTTCAGATGATCATGGAGGCTTCTCGGACGA GGAGATAGTAGATTTCTTGGTGGCTCTGCTTGTTGCAGGCTATGAAACTACATCTACAAGCATGACTCTTGCTGTTAAGTTCCTCACCGAGACACCTCTG GCTCTGGCTCAGATCAAGGAGGAGCATGAACAGATTAGAGGAAAGAAGGGCGAGGAGGGAGCTCTTGAGTGGAGTGATTACAAGTCAATGACCTTCACTC AGTGTGTTGTTAATGAGACTTTGAGAATAGCAAACATAATAGGTGGGATATTTAGACGAACAATGACAGATATAAATGTTAAAGGTTATACAATTCCTAA AGGATGGAAGGTTTTTGCATCCTTTCGTGGTGTACATTTAGACCATGAATACTTCAAAGATGCTCGAACTTTCAATCCGTGGAGATGGCAGGACGACTCG GGGGCAACATGCCCAGCAAATGTGTTCACTCCTTTTGGAGGAGGGCAACGGTTATGCCCAGGATATGAACTTGCTAGAGTAGAACTCTCTGTTTTCCTTC ACCACCTGGTCACCCGTTTCAGTTGGACCCCAGCTGAACAAGACAAGCTGGTTTTCTTTCCAACTACGCGGACACAAAAGCGATATCCCATCAATGTGCA GCGTCGAAATCGTGTCTAA
AA sequence Show only first row Show all	>Potri.008G067500.1 pacid=42808078 polypeptide=Potri.008G067500.1.p locus=Potri.008G067500 ID=Potri.008G067500.1.v4.1 annot-version=v4.1 MAVSVCLVLFIVLPAIVFIVHRSSRFRRLRLPPGSLGLPFVGETLQLISAYKTENPEPFIDERVNRFGSLFKTHIFGEPTVFSVDPETNRFILQNEGKLF ECSYPGSISNLLGKHSLLLMTGNLHKKMHSLTMSFANSSIIRDHLLVDIDRLIRLNLDSWSDRVLLMEEAKKTTFELTMKQLMSFDPCEWTESLRREYVL VIEGFFSVPLPILSPTYRRAIKARTKVAEALSLVVKQRRIESESGEKKKDMLGALLASDDHGGFSDEEIVDFLVALLVAGYETTSTSMTLAVKFLTETPL ALAQIKEEHEQIRGKKGEEGALEWSDYKSMTFTQCVVNETLRIANIIGGIFRRTMTDINVKGYTIPKGWKVFASFRGVHLDHEYFKDARTFNPWRWQDDS GATCPANVFTPFGGGQRLCPGYELARVELSVFLHHLVTRFSWTPAEQDKLVFFPTTRTQKRYPINVQRRNRV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05690		CBB3, DWF3, CYP...	DWARF 3, CYTOCHROME P450 90A1,...		Potri.008G067500 [exp]	0	1
AT5G27730			Protein of unknown function (D...		Potri.013G016900 [exp]	4.89	0.8918
AT2G47900	TUB	AtTLP3	tubby like protein 3 (.1.2.3)		Potri.008G195200 [exp]	5.47	0.8435
AT4G34020		AtDJ1C	DJ-1 homolog C, Class I glutam...		Potri.009G100900 [exp]	6.48	0.8884
AT4G14880		OLD3, CYTACS1, ...	ONSET OF LEAF DEATH 3, O-acety...		Potri.013G035200 [exp]	9.16	0.8637
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.013G154300 [exp]	15.74	0.8627
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Potri.006G160300 [exp]	17.83	0.8865
AT1G03670			ankyrin repeat family protein ...		Potri.018G078450 [exp]	22.84	0.8623
AT5G51820		STF1, PGM1, ATP...	STARCH-FREE 1, ARABIDOPSIS THA...		Potri.012G132500 [exp]	23.49	0.8705	Pt-PGM.4
AT5G14370			CCT motif family protein (.1)		Potri.001G339200 [exp]	25.80	0.8390
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Potri.008G026600 [exp]	27.92	0.8355

Compare expression of checked genes

Potri.008G067500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.