Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05680 997 / 0 EMB2789, MOS7 MODIFIER OF SNC1,7, EMBRYO DEFECTIVE 2789, nuclear pore complex protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G189700 [exp] 1425 / 0 AT5G05680 1021 / 0.0 MODIFIER OF SNC1,7, EMBRYO DEFECTIVE 2789, nuclear pore complex protein-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028296 [exp] 1111 / 0 AT5G05680 1013 / 0.0 MODIFIER OF SNC1,7, EMBRYO DEFECTIVE 2789, nuclear pore complex protein-related (.1) Lus10040194 [exp] 1109 / 0 AT5G05680 1010 / 0.0 MODIFIER OF SNC1,7, EMBRYO DEFECTIVE 2789, nuclear pore complex protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10168 [poplar] [flax] Nup88 Nuclear pore component
Representative CDS sequence Show only first row Show all	>Potri.008G067600.1 pacid=42807753 polypeptide=Potri.008G067600.1.p locus=Potri.008G067600 ID=Potri.008G067600.1.v4.1 annot-version=v4.1 ATGAGATTCAACTTCGACTTAACAGAATCAAACCCAAACTCTTCTTCTCGAAAATCCCTAACTCCCAAAGAAGATATCCAATGGGTTCCACTCCAAAACC ACCCACTCTTCGCTTCTTCCGACGAAGACACCGCACCTCGATCACCATCTAATCTACTAGCTTGGGACTGCGCTTCTAGATTTTACTATTGGGATTCAAA CCTCCGTTGCCTCCATCGAATTTCTATTCGGCTCGGAGATCCCGAACCTTCCTCTGTCCTTGCTGCCTCTCTTTCTAAGGTACTGCAAACTGATGCGGAG ATTAATTTTGAGGTTAATAAAATTTCTATAAATAGAAATGGCTCTGCGATGGTTCTCTCCGGCACCAATGGTTTATGTGTTATGTATCTCTATGGACGCT CTTTTGGTAAAGATAACGCCATTGTTTGCAGGACCGTGTCCATTGGTTCACAAATTTATTTTAATGAGAGCAATGTAATACGGACGCGAAGAGTTTCGTG GCATCCTTACAGTGATGCGCATTTAGGAATTCTTTCTTCTGATTCAGTTTTCCGATTGTTTGACTTGTCTTCAGATGTCCTGAAGCCAGAGCAGGAATAT TATCTACAGCCTGTTGAACCAGGTAGATCCAGGAATGCTGCATCAATCTGTCCTGTTGATTTTTCTTTTGGGGGCGATCACTTGTGGGACAGATTTAGTG TTTTCCTATTATTTAGTGATGGTTCAGTTTACATTCTTTGCCCAATTGTTCCATTTGGAAGTGTCCACAAATGGGAATCTGTGTTGGAGATATATAGTGA TGCTGAAACATTTGGACTGAAATCAGCAAATCCAGTTGCTGTAAATAACTCAAATCGGGCAATCTCTTGGTTGGAAGCAACATTTCCCGAGTTAGCCCAT GAATCAAAGGAGGGGGGGTTATCAACACTAAAAGCTCATCCTTATGCTGTATTTGATGCATCACTTTGTTTGCAGGGCCCTCTACGCAAAGTACATCATG GTGGGGAAGATGAAGACCCAGCAGTCAGTGTTGCAGAATGCGAAGGTCGTGCAATCAGTTTTCTCTATGATTTAGCCAGCAAAGACTCAATTCTGGTGAC TGCCTGGAGTGGTGGGCAGATGCAAATAGACGCCCTAGCTGATGAAATCCAGCCAGTCTGGATGGTTGGTAGCCCACCTCGTCTTCGTGTTAATTCCCAA GACCATATTATCGGTCTTGCAATGCTTTGTGAGTCTATCTCAGGTGAGCTTCCTGTTGTGAAGCTTGATCAACCACATGATAATACTGTCTGGTTAGGTC ATCCACCACCTTTGTTGAGACTTGCAATTGTGGATTTGGCCTTACCAAGGAAAACAGAAAGTGGGTCATATATTTCAATGTTTGTTGACCCCGTTATGCC TGAAAGAATATATTCTGTTCATGATGGAGGGATAGACTCAATTGTTCTGCATTTTCTTCCATTTACTAGTCAGTCTGGTGGCAAGGATGAGATGGTCCGG ACCCCCTCTGTGCATCCTGTCCTTAGCACATGCCAGGTGGAGAACTCCACACCTTCTCCTCTTTGTGGCTTTATAGCATTGTCAGATTCATTTGGGTACT CGTGGATTGCAGTGATTACTTCCAATCAAGAATGTGTTGTGCTAGAAATGAGAACATTAAATTTATTGTTACCTGTACATGTTGACATGGAGAAGAAATC TGAAACTGTGGAAGAATGGACAAATAGAAATCCTCCAGACATCATAAGCAAAGAACTACTTATTGGTCCTAAGGTGGTTCTTGTTCCTCAGGGTTCACCA AATCTTCGATCTGTTGCTGCTGATTCTATTGAAGGCCGGTCAACTCTTCACCAGTACCTAAACCTTTTCCATGAAAACTATGTCGAGTATGCACATAAGG TCTACTTTGAACTGGAGCATCATGGCCCCCGGTTGAAGAGAATCATTGATGATCAGCATGCTCGATTAGGTGAAGCACAGGAGAAACTTTCAAAAGTGAG GAGGAAGCAGTCAGGATTGGAGGACAGGATTAATAATGCAATGCACCAACACAATCTTCTGGAACAGCGCTTGCATTGCTTGAAGAACTTGCCTGGGGCT CATAAGAAGCCTTTGTCTAAAGCAGAACGTGAATTTAAGTCTGAGCTTGACCATTTTACAGGAGTTGGATTGGATGCTTTGCGTACTTCCATTGATACCT TAAGAGCAAGGCTGAGAAGGTTCACCCAATCTTCGAAAGGTGATGTAGCAAATCAGCAAATGAAAATAGGGGGGAGGAATTATGCTCTAGATGCCCAAAT ATTGCAGCTGAAATCCTCAATTGCGAAACTCTCGCTTCTCAATAGTGAGAATACAAAGAAAGTTAAGCTTGTTGAATCCGTGTTAAAAAATCAGGAAAGC AGTAGATGA
AA sequence Show only first row Show all	>Potri.008G067600.1 pacid=42807753 polypeptide=Potri.008G067600.1.p locus=Potri.008G067600 ID=Potri.008G067600.1.v4.1 annot-version=v4.1 MRFNFDLTESNPNSSSRKSLTPKEDIQWVPLQNHPLFASSDEDTAPRSPSNLLAWDCASRFYYWDSNLRCLHRISIRLGDPEPSSVLAASLSKVLQTDAE INFEVNKISINRNGSAMVLSGTNGLCVMYLYGRSFGKDNAIVCRTVSIGSQIYFNESNVIRTRRVSWHPYSDAHLGILSSDSVFRLFDLSSDVLKPEQEY YLQPVEPGRSRNAASICPVDFSFGGDHLWDRFSVFLLFSDGSVYILCPIVPFGSVHKWESVLEIYSDAETFGLKSANPVAVNNSNRAISWLEATFPELAH ESKEGGLSTLKAHPYAVFDASLCLQGPLRKVHHGGEDEDPAVSVAECEGRAISFLYDLASKDSILVTAWSGGQMQIDALADEIQPVWMVGSPPRLRVNSQ DHIIGLAMLCESISGELPVVKLDQPHDNTVWLGHPPPLLRLAIVDLALPRKTESGSYISMFVDPVMPERIYSVHDGGIDSIVLHFLPFTSQSGGKDEMVR TPSVHPVLSTCQVENSTPSPLCGFIALSDSFGYSWIAVITSNQECVVLEMRTLNLLLPVHVDMEKKSETVEEWTNRNPPDIISKELLIGPKVVLVPQGSP NLRSVAADSIEGRSTLHQYLNLFHENYVEYAHKVYFELEHHGPRLKRIIDDQHARLGEAQEKLSKVRRKQSGLEDRINNAMHQHNLLEQRLHCLKNLPGA HKKPLSKAEREFKSELDHFTGVGLDALRTSIDTLRARLRRFTQSSKGDVANQQMKIGGRNYALDAQILQLKSSIAKLSLLNSENTKKVKLVESVLKNQES SR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05680		EMB2789, MOS7	MODIFIER OF SNC1,7, EMBRYO DEF...		Potri.008G067600 [exp]	0	1
AT2G39140		PDE328, SVR1	SUPPRESSOR OF VARIEGATION 1, P...		Potri.010G226801 [exp]	9.89	0.7856
AT2G30780			Tetratricopeptide repeat (TPR)...		Potri.016G119600 [exp]	15.74	0.7508
AT1G77230			Tetratricopeptide repeat (TPR)...		Potri.005G184001 [exp]	31.62	0.7429
AT2G44970			alpha/beta-Hydrolases superfam...		Potri.014G055900 [exp]	33.54	0.7304
AT5G16180		CRS1, ATCRS1	ARABIDOPSIS ORTHOLOG OF MAIZE ...		Potri.017G116700 [exp]	37.81	0.7761
AT3G14400		UBP25	ubiquitin-specific protease 25...		Potri.011G112800 [exp]	42.26	0.7126	UBP25.1
AT4G37940	MADS	AGL21	AGAMOUS-like 21 (.1)		Potri.001G284301 [exp]	44.72	0.7166
AT2G30740			Protein kinase superfamily pro...		Potri.017G036501 [exp]	53.81	0.7366
AT5G07670			RNI-like superfamily protein (...		Potri.014G059100 [exp]	54.44	0.7405
AT1G35670		CPK11, ATCDPK2,...	calcium-dependent protein kina...		Potri.019G050950 [exp]	56.55	0.7401

Compare expression of checked genes

Potri.008G067600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.