Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	TTN10.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55490 272 / 2e-94 GINS complex protein (.1) AT1G19080 272 / 2e-94 PSF3, TTN10 TITAN 10, Partner of SLD5 3, GINS complex protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G189200 [exp] 351 / 1e-125 AT3G55490 271 / 8e-94 GINS complex protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014848 [exp] 179 / 1e-58 AT1G19080 157 / 3e-50 TITAN 10, Partner of SLD5 3, GINS complex protein (.1.2) Lus10030406 [exp] 177 / 3e-58 AT1G19080 157 / 2e-50 TITAN 10, Partner of SLD5 3, GINS complex protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05916 [poplar] [flax] Sld5 GINS complex protein
Representative CDS sequence Show only first row Show all	>Potri.008G068100.1 pacid=42808861 polypeptide=Potri.008G068100.1.p locus=Potri.008G068100 ID=Potri.008G068100.1.v4.1 annot-version=v4.1 ATGGCAAATTACTATGACATTGATAGTATTCTCGTGGAGGAAGAGTTTGTCCCGGTTGTGTTTCAAAAGGCTATAAATGGAGTGAAAATCGATGAAAGTA CTGAAAAAGGATATGTTGAACAAGGTTCAAAGACACAGCTACCTTTCTGGCTTGCTCATGAATTGCACATGAGGCAAGCTGTATCGATAGGTGTTCCTGC CTGTTTTAATCAAAAAACAAGGCTGGAAATTCAGGCAGACGCTGCTTGTGTGGACCTGAGATCCCGCTGTCCATACTTTTATGAATTTGGATGCAAGCTA GCTCCACTGTGTGATAAATCCATTGGATTGTTGCTTGCATATGCATTTCGAATCCGGTATAAGGAAGTCCTACACAAGGCACACACCACAGCATTTGCAG CAGCTTCCAGATTCCTGATGCTCCTGACTAAAGAAGAAACTTACATGTATGAAGCAGCTCAATCATCCATGGCAGCCTTTAAGAAATGGCGGATGGGTGG CCCCAGATTGCAGAGAGCTTCAATTCTTGGGAGGAAGAGAAAACCAGCTGAATAG
AA sequence Show only first row Show all	>Potri.008G068100.1 pacid=42808861 polypeptide=Potri.008G068100.1.p locus=Potri.008G068100 ID=Potri.008G068100.1.v4.1 annot-version=v4.1 MANYYDIDSILVEEEFVPVVFQKAINGVKIDESTEKGYVEQGSKTQLPFWLAHELHMRQAVSIGVPACFNQKTRLEIQADAACVDLRSRCPYFYEFGCKL APLCDKSIGLLLAYAFRIRYKEVLHKAHTTAFAAASRFLMLLTKEETYMYEAAQSSMAAFKKWRMGGPRLQRASILGRKRKPAE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55490			GINS complex protein (.1)		Potri.008G068100 [exp]	0	1	TTN10.1
AT3G49100			Signal recognition particle, S...		Potri.005G219400 [exp]	3.74	0.8168
AT2G19450		RDS1, DGAT1, AT...	TRIACYLGLYCEROL BIOSYNTHESIS D...		Potri.006G147600 [exp]	13.22	0.7580
AT1G76200			unknown protein		Potri.002G012700 [exp]	16.24	0.7784
AT1G13330		AHP2	Arabidopsis Hop2 homolog (.1)		Potri.008G118800 [exp]	21.16	0.7393
AT1G11880			transferases, transferring hex...		Potri.003G216900 [exp]	25.21	0.6507
AT3G30841			Cofactor-independent phosphogl...		Potri.004G106200 [exp]	29.24	0.6614
AT1G80230			Rubredoxin-like superfamily pr...		Potri.003G060100 [exp]	33.52	0.7700
AT1G73177		APC13, BNS	anaphase-promoting complex 13,...		Potri.011G067800 [exp]	37.68	0.7640
AT3G05590		RPL18	ribosomal protein L18 (.1)		Potri.005G023500 [exp]	41.49	0.7584	Pt-RPL18.12
AT1G67350			unknown protein		Potri.003G173000 [exp]	43.12	0.7506

Compare expression of checked genes

Potri.008G068100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.