Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ELF4.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40080 112 / 3e-33 ELF4 EARLY FLOWERING 4, Protein of unknown function (DUF1313) (.1) AT2G29950 96 / 1e-26 ELF4-L1 ELF4-like 1 (.1) AT2G06255 86 / 1e-22 ELF4-L3 ELF4-like 3 (.1) AT1G17455 80 / 2e-20 ELF4-L4 ELF4-like 4 (.1.2) AT1G72630 75 / 2e-18 ELF4-L2 ELF4-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G251600 [exp] 109 / 6e-32 AT2G29950 109 / 6e-32 ELF4-like 1 (.1) Potri.009G046400 [exp] 106 / 1e-30 AT2G29950 99 / 6e-28 ELF4-like 1 (.1) Potri.003G063900 [exp] 92 / 2e-25 AT1G17455 156 / 7e-51 ELF4-like 4 (.1.2) Potri.001G170100 [exp] 91 / 9e-25 AT1G17455 158 / 1e-51 ELF4-like 4 (.1.2) Potri.006G143800 [exp] 87 / 4e-23 AT1G17455 166 / 1e-54 ELF4-like 4 (.1.2) Potri.019G131700 [exp] 81 / 1e-20 AT2G06255 107 / 2e-31 ELF4-like 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040667 [exp] 105 / 4e-30 AT2G29950 108 / 4e-31 ELF4-like 1 (.1) Lus10028288 [exp] 100 / 1e-28 AT2G40080 110 / 1e-32 EARLY FLOWERING 4, Protein of unknown function (DUF1313) (.1) Lus10018237 [exp] 98 / 4e-27 AT2G29950 112 / 6e-33 ELF4-like 1 (.1) Lus10000371 [exp] 89 / 1e-23 AT1G17455 140 / 2e-44 ELF4-like 4 (.1.2) Lus10000408 [exp] 88 / 2e-23 AT1G17455 148 / 1e-47 ELF4-like 4 (.1.2) Lus10001250 [exp] 88 / 2e-23 AT1G17455 148 / 1e-47 ELF4-like 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07011 [poplar] [flax] Elf4 Early Flowering 4 domain
Representative CDS sequence Show only first row Show all	>Potri.008G068200.1 pacid=42807964 polypeptide=Potri.008G068200.1.p locus=Potri.008G068200 ID=Potri.008G068200.1.v4.1 annot-version=v4.1 ATGAACACCACCCTCGATTCATTCTCCGCTGCCGAATCGAGCATGGAAGACACCTCCAATCCCTCAATCACTACCAACCAAAACGCCAACAAAGAAGATG AAGTTGATGCAGAGGTTTGGGCAACATTCAACAATAGTTTTCGACAAGTTCAGTCGGTTCTGGACAGAAACAGAGTTTTGATTCAACAAGTGAATGAGAA TCACCAGTCTAGAACTCCTGACAACATGGTCAAAAACGTCTCTCTGATTCAAGAACTTAACGGCAATATCTCCAAGGTTGTTGGGCTTTACTCTGATTTG AATTCCAATTTCTCCACTGCTTATCATCAGCGAAACCACAACGGTAAAAATAACGGCAAGAAGGCCTGA
AA sequence Show only first row Show all	>Potri.008G068200.1 pacid=42807964 polypeptide=Potri.008G068200.1.p locus=Potri.008G068200 ID=Potri.008G068200.1.v4.1 annot-version=v4.1 MNTTLDSFSAAESSMEDTSNPSITTNQNANKEDEVDAEVWATFNNSFRQVQSVLDRNRVLIQQVNENHQSRTPDNMVKNVSLIQELNGNISKVVGLYSDL NSNFSTAYHQRNHNGKNNGKKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40080		ELF4	EARLY FLOWERING 4, Protein of ...		Potri.008G068200 [exp]	0	1	ELF4.1
AT3G14630		CYP72A9	"cytochrome P450, family 72, s...		Potri.011G099701 [exp]	4.24	0.7168
AT5G61340			unknown protein		Potri.004G102800 [exp]	14.07	0.6576
AT2G39650			Protein of unknown function (D...		Potri.010G203700 [exp]	24.49	0.6172
AT2G33255			Haloacid dehalogenase-like hyd...		Potri.010G063700 [exp]	30.00	0.6522
AT3G14660		CYP72A13	"cytochrome P450, family 72, s...		Potri.011G099200 [exp]	56.92	0.6438
AT1G56300			Chaperone DnaJ-domain superfam...		Potri.005G020300 [exp]	58.14	0.6398
AT3G29270			RING/U-box superfamily protein...		Potri.012G067200 [exp]	67.83	0.5956
AT1G56300			Chaperone DnaJ-domain superfam...		Potri.013G010800 [exp]	68.05	0.5746
AT2G42520			P-loop containing nucleoside t...		Potri.003G217800 [exp]	71.13	0.5967
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Potri.011G101250 [exp]	74.09	0.5768

Compare expression of checked genes

Potri.008G068200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.