Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PLC1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08510 889 / 0 ATPLC2 phospholipase C 2 (.1.2.3) AT3G55940 835 / 0 Phosphoinositide-specific phospholipase C family protein (.1) AT2G40116 695 / 0 Phosphoinositide-specific phospholipase C family protein (.1) AT5G58700 680 / 0 ATPLC4 phosphatidylinositol-speciwc phospholipase C4 (.1.2) AT5G58690 642 / 0 ATPLC5 phosphatidylinositol-speciwc phospholipase C5 (.1) AT5G58670 634 / 0 ATPLC1 phospholipase C 1, ARABIDOPSIS THALIANA PHOSPHOLIPASE C, phospholipase C1 (.1) AT4G38530 608 / 0 ATPLC1 phospholipase C1 (.1) AT3G47290 375 / 1e-123 ATPLC8 phosphatidylinositol-speciwc phospholipase C8 (.1) AT3G47220 358 / 4e-117 ATPLC9 phosphatidylinositol-speciwc phospholipase C9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G188800 [exp] 1046 / 0 AT3G08510 869 / 0.0 phospholipase C 2 (.1.2.3) Potri.001G252100 [exp] 756 / 0 AT5G58700 791 / 0.0 phosphatidylinositol-speciwc phospholipase C4 (.1.2) Potri.001G252300 [exp] 741 / 0 AT3G08510 701 / 0.0 phospholipase C 2 (.1.2.3) Potri.010G188900 [exp] 735 / 0 AT2G40116 806 / 0.0 Phosphoinositide-specific phospholipase C family protein (.1) Potri.008G068300 [exp] 734 / 0 AT2G40116 823 / 0.0 Phosphoinositide-specific phospholipase C family protein (.1) Potri.009G046600 [exp] 621 / 0 AT3G08510 557 / 0.0 phospholipase C 2 (.1.2.3) Potri.001G252104 [exp] 88 / 5e-21 AT3G08510 82 / 1e-19 phospholipase C 2 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014845 [exp] 943 / 0 AT3G08510 866 / 0.0 phospholipase C 2 (.1.2.3) Lus10009891 [exp] 939 / 0 AT3G08510 849 / 0.0 phospholipase C 2 (.1.2.3) Lus10028287 [exp] 926 / 0 AT3G08510 840 / 0.0 phospholipase C 2 (.1.2.3) Lus10040199 [exp] 866 / 0 AT3G08510 786 / 0.0 phospholipase C 2 (.1.2.3) Lus10040664 [exp] 727 / 0 AT5G58700 744 / 0.0 phosphatidylinositol-speciwc phospholipase C4 (.1.2) Lus10009894 [exp] 697 / 0 AT2G40116 824 / 0.0 Phosphoinositide-specific phospholipase C family protein (.1) Lus10036182 [exp] 690 / 0 AT3G08510 669 / 0.0 phospholipase C 2 (.1.2.3) Lus10038319 [exp] 676 / 0 AT3G08510 659 / 0.0 phospholipase C 2 (.1.2.3) Lus10018241 [exp] 528 / 0 AT5G58700 532 / 0.0 phosphatidylinositol-speciwc phospholipase C4 (.1.2) Lus10018240 [exp] 450 / 2e-153 AT5G58700 473 / 1e-162 phosphatidylinositol-speciwc phospholipase C4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain CL0384 [poplar] [flax] PLC PF00387 [poplar] [flax] PI-PLC-Y Phosphatidylinositol-specific phospholipase C, Y domain CL0384 [poplar] [flax] PLC PF00388 [poplar] [flax] PI-PLC-X Phosphatidylinositol-specific phospholipase C, X domain CL0220 [poplar] [flax] EF_hand PF09279 [poplar] [flax] EF-hand_like Phosphoinositide-specific phospholipase C, efhand-like
Representative CDS sequence Show only first row Show all	>Potri.008G068400.1 pacid=42807859 polypeptide=Potri.008G068400.1.p locus=Potri.008G068400 ID=Potri.008G068400.1.v4.1 annot-version=v4.1 ATGTCCAAACAGACATACAGAGTTTGCTTCTGCTTTCGCAGGAGGTTCAAGCTAGCAGTGGCCGAGGTACCGGATGAGATCAAGGCCTTGTTTGATTTGT ACTCGGAGAATGGCATCATGACCGCTGATCATATCCACAGGTTCTTGATCGAGGTTCAAAAACAAGAAAAGGCCACTTTCGAGGAAGCACAATCTATTGT TGAAAGTCTCAAACATTTGTCTCTTTTTCACCGTAAAGGACTCCATCTTGAGGCCTTCTTTAAGTATCTTTTTGGCGATACTAACCCTCCTCTTGATCTT AAACTTGGGGTGCATCATGATATGACAGCACCCCTTTCACACTATTTCATATATACTGGCCACAATTCATATCTAACTGGGAATCAGCTTAGTAGTGAAT GCAGCGATGTTCCCATCATAAATGCTCTGAAAAAAGGTGTGAGGGTAATTGAATTGGATATATGGCCAAATTCTGACAATGATGATGTGGAGGTACTTCA TGGGAGGACTTTGACAACTCCGGTGCAACTTATCAAATGTTTGAGGTCAATTAATGAGCACGCTTTTACTGCATCTGAATTCCCTGTTGTTATAACTCTA GAAGACCACCTTACTCCAGATCTTCAGGCTAAAGTGGCTCAGATGGTCACTCAAACATTTGGAGACATCCTGTTTACTCCTGGCTCAGAACGCTTGAAGG AATTCCCTTCCCCTGATTCTCTGAAGAGACGGATTATCATATCAACAAAACCACCAAAGGAATACCTTGAGGCTAAGGAAATTAAGGATAAAGAGAGTCA TTACCAGAAGGGGAATGCTGCTTCCGATGAAGAAGCTTGGGGGAAAGAAATCCCAATTCTTAATGGCCATATTCTTGCTGATGACAAGAATGAATCGGAC AAAGATGATGATGATGCAGAGGAAGATCTTGATGAAGGAGATCACAAGTTGCAGCATGATATAGCACCAGAATACAAACGTTTGATTGCTATTCATGCTG GGAAGCCTAAAGGTGGATTAGATGAATGTCTGAAAGTAGATCCTGATAAAGTGAGGCGTCTTAGCTTAAGTGAGCAACAGCTTGAAAAGGCTGCGGAAAC CCATGGAAAAGAAATTGTCAGGTTTACCCAGCGGAATATACTCAGGGTGTATCCAAAGGGTACTCGTGTGAACTCATCCAACTACAACCCACTAATTGGA TGGATGCATGGTGCTCAAATGGTTGCTTTTAACATGCAGGGATATGGAAGATCACTCTGGTTGATGCAAGGAATGTTCAGAGCCAATGGTGGGTGTGGCT TTGTGAAGAAACCAAGTTTTCTACTGAAGTCTGGTCCACATGGCGAGGTATTTGATACCAAAGCTAAGTTACCTATGCAAAAAACTTTGAAGGTGAAAAT ATACATGGGTGAAGGATGGTTTTATGATTTCCAGCACACACATTTTGATGCATATTCCCCACCAGATTTCTATGCGAGGGTTGGGATTGCCGGGGTCCCT GCAGATACTGTAATGAAGAAAACGAAGACTCTGGAGGACAGTTGGATACCTTTTTGGAATGAGGAGTTTGAGTTTCCATTAACTGTTCCAGAACTAGCTC TGCTTCGGATTGAAGTTCATGAATATGACATGTCAGAGAAGGATGACTTTGGAGGTCAAACATGCCTTCCTGTATGGGAGCTAAGAGAAGGGATTCGAGC AGTTCCACTCCATGACCGCAAGGGAGAGAGATACAAATGTGTAAAGCTCCTTGTGCGCCTTGAATTTGTTTGA
AA sequence Show only first row Show all	>Potri.008G068400.1 pacid=42807859 polypeptide=Potri.008G068400.1.p locus=Potri.008G068400 ID=Potri.008G068400.1.v4.1 annot-version=v4.1 MSKQTYRVCFCFRRRFKLAVAEVPDEIKALFDLYSENGIMTADHIHRFLIEVQKQEKATFEEAQSIVESLKHLSLFHRKGLHLEAFFKYLFGDTNPPLDL KLGVHHDMTAPLSHYFIYTGHNSYLTGNQLSSECSDVPIINALKKGVRVIELDIWPNSDNDDVEVLHGRTLTTPVQLIKCLRSINEHAFTASEFPVVITL EDHLTPDLQAKVAQMVTQTFGDILFTPGSERLKEFPSPDSLKRRIIISTKPPKEYLEAKEIKDKESHYQKGNAASDEEAWGKEIPILNGHILADDKNESD KDDDDAEEDLDEGDHKLQHDIAPEYKRLIAIHAGKPKGGLDECLKVDPDKVRRLSLSEQQLEKAAETHGKEIVRFTQRNILRVYPKGTRVNSSNYNPLIG WMHGAQMVAFNMQGYGRSLWLMQGMFRANGGCGFVKKPSFLLKSGPHGEVFDTKAKLPMQKTLKVKIYMGEGWFYDFQHTHFDAYSPPDFYARVGIAGVP ADTVMKKTKTLEDSWIPFWNEEFEFPLTVPELALLRIEVHEYDMSEKDDFGGQTCLPVWELREGIRAVPLHDRKGERYKCVKLLVRLEFV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Potri.008G068400 [exp]	0	1	Pt-PLC1.2
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Potri.009G087200 [exp]	2.23	0.9257
AT5G57830			Protein of unknown function, D...		Potri.006G181300 [exp]	2.44	0.9172
AT3G12955			SAUR-like auxin-responsive pro...		Potri.011G143400 [exp]	3.46	0.9004	SAUR5
AT5G13560			unknown protein		Potri.010G212900 [exp]	3.46	0.9074
AT5G18940			Mo25 family protein (.1.2)		Potri.010G028700 [exp]	6.00	0.8997
AT3G15050		IQD10	IQ-domain 10 (.1)		Potri.001G375700 [exp]	9.38	0.8933
AT5G27000		KATD, ATK4	KINESIN-LIKE PROTEIN IN ARABID...		Potri.013G011500 [exp]	10.24	0.8988
AT3G27890		NQR	NADPH:quinone oxidoreductase (...		Potri.001G028000 [exp]	11.00	0.8842	Pt-NQR.2
AT3G23090			TPX2 (targeting protein for Xk...		Potri.008G162800 [exp]	12.48	0.8837
AT1G67410			Exostosin family protein (.1)		Potri.008G034500 [exp]	12.48	0.8838

Compare expression of checked genes

Potri.008G068400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.