Plant FIBer expression Database

Potri.008G068500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G05660 172 / 2e-48 EBI, ATNFXL2 NFX1-like 2, EARLY BIRD, Arabidopsis NF-X like 2, sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors (.1)
AT1G10170 71 / 2e-13 ATNFXL1 NF-X-like 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G188700
[exp]
228 / 8e-69 AT5G05660 1038 / 0.0 NFX1-like 2, EARLY BIRD, Arabidopsis NF-X like 2, sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors (.1)
Potri.015G034500
[exp]
63 / 6e-11 AT1G10170 1363 / 0.0 NF-X-like 1 (.1)
Potri.012G043700
[exp]
62 / 1e-10 AT1G10170 1378 / 0.0 NF-X-like 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040200
[exp]
199 / 2e-58 AT5G05660 1064 / 0.0 NFX1-like 2, EARLY BIRD, Arabidopsis NF-X like 2, sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors (.1)
Lus10028286
[exp]
198 / 1e-57 AT5G05660 1131 / 0.0 NFX1-like 2, EARLY BIRD, Arabidopsis NF-X like 2, sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors (.1)
Lus10025071
[exp]
63 / 9e-11 AT1G10170 1365 / 0.0 NF-X-like 1 (.1)
Lus10034470
[exp]
61 / 2e-10 AT1G10170 1345 / 0.0 NF-X-like 1 (.1)
PFAM info
Representative CDS sequence
>Potri.008G068500.2 pacid=42806914 polypeptide=Potri.008G068500.2.p locus=Potri.008G068500 ID=Potri.008G068500.2.v4.1 annot-version=v4.1
ATGCTCACGTGGATAACACGTGACTTCATTACCCCGCCCCTTGTTCGTTCTTCAATGCCAGCCGAACCAAACCCCACTCCAGTTCCACTGCTCCAGAGTC
CAGCTCCCCAAATTCTGAAATGTCCTCTGCCCACAGCCACCATCAACACCGACAGCTGTTCTCCGAATCCGTCACCACCACTCTGCAGATCTCACAAACT
CAATTTTCAAATCCTATCATGTCTCATTTCTCTCGAAGCATCAAACCATCCGATCCAACCTGGTCTTCCACTTCTCTATGCTGCGCCGTTTTCGACCTTA
TCTGGTATCGAATCCTGGACCCGCCAATCCTCCGATCTCTCCGCTCTTCGAGCCTCCACGCGCCTCCCTGCCTCCCCCGATAAAGCCGCCGAATCATCCA
CCTGCATCTGCCCTAAATGCCGCTCTGAATATTCCATATCTCAAATTCCAAGAAGTTACCTCTGTTTCTGTGGCAAAGTGGAAAATCCACCACATGATAA
TCCCCGGATTTTAACTCACTCTTGCTGCGAAATCTGTTACCGACCGTTGAAGAATAACTGTGGTTATTTCTGTTTGTTGCTATGCCATCCCGTTCCTTCC
CATCTTGCCCGAAACTTGTCAAAACGACATGTTTTTGTGGCAAAACGATGGATGTTAAGCTGCAGTTACAAATTGTTTTCCTGTAACAATGTCTGTAATA
AATCATTGGATTGTGGGATTCATAATTGTAAGCAAATCTGCCATGATGGAACTTGCCTACTGTGTAATGGCCGCGGGGTTTATAAATGTTTATGTGGAAG
GGAAGTCGAGGAGAGGGGAGTGTTGTGA
AA sequence
>Potri.008G068500.2 pacid=42806914 polypeptide=Potri.008G068500.2.p locus=Potri.008G068500 ID=Potri.008G068500.2.v4.1 annot-version=v4.1
MLTWITRDFITPPLVRSSMPAEPNPTPVPLLQSPAPQILKCPLPTATINTDSCSPNPSPPLCRSHKLNFQILSCLISLEASNHPIQPGLPLLYAAPFSTL
SGIESWTRQSSDLSALRASTRLPASPDKAAESSTCICPKCRSEYSISQIPRSYLCFCGKVENPPHDNPRILTHSCCEICYRPLKNNCGYFCLLLCHPVPS
HLARNLSKRHVFVAKRWMLSCSYKLFSCNNVCNKSLDCGIHNCKQICHDGTCLLCNGRGVYKCLCGREVEERGVL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G05660 EBI, ATNFXL2 NFX1-like 2, EARLY BIRD, Arabi... Potri.008G068500
[exp]
0 1
AT2G22720 SPT2 chromatin protein (.1.2.3... Potri.005G148700
[exp]
1.00 0.8608
AT3G45100 SETH2 UDP-Glycosyltransferase superf... Potri.016G130000
[exp]
5.91 0.8177
AT5G53850 haloacid dehalogenase-like hyd... Potri.011G118132
[exp]
6.63 0.7618
AT2G16405 Transducin/WD40 repeat-like su... Potri.009G121100
[exp]
7.07 0.7856
AT4G36980 unknown protein Potri.005G138200
[exp]
10.95 0.8328
AT3G23530 Cyclopropane-fatty-acyl-phosph... Potri.010G067900
[exp]
15.16 0.7884
AT4G36980 unknown protein Potri.007G044100
[exp]
16.52 0.8135
AT4G35520 MLH3, ATMLH3 MUTL protein homolog 3 (.1) Potri.005G101900
[exp]
18.43 0.8207
AT2G38720 MAP65-5 microtubule-associated protein... Potri.001G032566
[exp]
18.57 0.7234
AT1G30970 C2H2ZnF SUF4 suppressor of FRIGIDA4, zinc f... Potri.003G074200
[exp]
20.44 0.7902

Potri.008G068500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.