Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55950 786 / 0 CCR3, ATCRR3 CRINKLY4 related 3 (.1) AT5G47850 342 / 1e-105 CCR4 CRINKLY4 related 4 (.1) AT3G59420 241 / 1e-67 ACR4 crinkly4 (.1) AT1G67720 207 / 6e-56 Leucine-rich repeat protein kinase family protein (.1) AT5G28680 193 / 4e-51 ANX2 ANXUR2, Malectin/receptor-like protein kinase family protein (.1) AT1G79620 193 / 4e-51 Leucine-rich repeat protein kinase family protein (.1) AT5G59700 192 / 5e-51 Protein kinase superfamily protein (.1) AT3G46290 192 / 5e-51 HERK1 hercules receptor kinase 1 (.1) AT3G58690 184 / 5e-51 Protein kinase superfamily protein (.1) AT1G24030 182 / 5e-51 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G188600 [exp] 1231 / 0 AT3G55950 791 / 0.0 CRINKLY4 related 3 (.1) Potri.001G252400 [exp] 758 / 0 AT3G55950 692 / 0.0 CRINKLY4 related 3 (.1) Potri.019G078300 [exp] 404 / 6e-129 AT5G47850 699 / 0.0 CRINKLY4 related 4 (.1) Potri.013G103300 [exp] 352 / 3e-109 AT5G47850 649 / 0.0 CRINKLY4 related 4 (.1) Potri.007G128400 [exp] 233 / 1e-64 AT3G59420 1264 / 0.0 crinkly4 (.1) Potri.017G029900 [exp] 231 / 4e-64 AT3G59420 1264 / 0.0 crinkly4 (.1) Potri.010G052800 [exp] 204 / 7e-55 AT1G67720 1330 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G181200 [exp] 204 / 1e-54 AT1G67720 1339 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G204000 [exp] 188 / 6e-53 AT1G52540 427 / 7e-150 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028285 [exp] 714 / 0 AT3G55950 734 / 0.0 CRINKLY4 related 3 (.1) Lus10040663 [exp] 627 / 0 AT3G55950 642 / 0.0 CRINKLY4 related 3 (.1) Lus10018242 [exp] 617 / 0 AT3G55950 632 / 0.0 CRINKLY4 related 3 (.1) Lus10029170 [exp] 386 / 5e-122 AT5G47850 678 / 0.0 CRINKLY4 related 4 (.1) Lus10040201 [exp] 323 / 8e-101 AT3G55950 359 / 8e-115 CRINKLY4 related 3 (.1) Lus10012995 [exp] 295 / 6e-94 AT5G47850 372 / 9e-125 CRINKLY4 related 4 (.1) Lus10015956 [exp] 233 / 1e-64 AT3G59420 1258 / 0.0 crinkly4 (.1) Lus10000764 [exp] 229 / 1e-63 AT3G59420 1255 / 0.0 crinkly4 (.1) Lus10034646 [exp] 208 / 6e-60 AT3G55950 178 / 2e-49 CRINKLY4 related 3 (.1) Lus10021003 [exp] 199 / 1e-55 AT1G79620 549 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0186 [poplar] [flax] Beta_propeller PF13540 [poplar] [flax] RCC1_2 Regulator of chromosome condensation (RCC1) repeat
Representative CDS sequence Show only first row Show all	>Potri.008G068700.2 pacid=42807862 polypeptide=Potri.008G068700.2.p locus=Potri.008G068700 ID=Potri.008G068700.2.v4.1 annot-version=v4.1 ATGACGAAACTACACCTCTCCTCCGCTGTCCTCTCCGTCACCACCCTGTCACTTCTCTCCTTCATCTTATCATCTCCATTTCTAACCCATGCCTTGGGCT CCGGCTCCACCCTCGCGGTCATCTCCGCCACCTCCACCGTCTGTGGCGTCGCCGCCTCCCAACCATCCCAAAGTATTACCTGCTATAGACGAACCCCCAT CGCCGAAATCATTACCGTCCAACCTAACGTCTCCTTCTCCGCCATCTCCGGCGGCTCCACCTTCTTCTGCGGTCTACGTTCTGGGGGCTATGCTTTCTTA TGCTGGGACACAACGAATTCCTTTTTTGAATCTCGAAGAGTCTATGTTAACAACACCGCCCTTCTACAAAACCTCTCTGTTGGTGATAATCAAGTGTGTG CAATTGTTAATGACACATCGAGTGTCAACAAAACTGGGACCGTTAGGTGTTGGAGGGGAGATGGTAATGCAAGTAAACAATCACCAAGCGAAGGCGATAA ATTTAAGTCAATTTCAAGTGGGTCTGGCTTCTCATGTGGGATTTTAATGGAAAATAACAGAATTAAGTGTTGGGGTAATAATGCAATTGCAAGAGAGATT GAACTTGGTTTTGCCGATATGATAATTTGGAATCTTGAAGTGGGTGGTTTACATGTTTGTGGTGTCAATTCTAGTGGCGTTTTGGTGTGCAAAGGGGATA ATAGATTTGGTCAATTGAATGTCCCTTCAAATAATGCATTGGAATATTCGCAGTTGGCTCTTGGGGCTAGTCATAGCTGTGCGATTCGAAGGAATAATGG ATCTGTTGTTTGTTGGGGAGGTGGTGGTGAATATAATGTGAGTGAGATTCAGGGTGTTTTCTTTGAGTCTATTGTTTCAGGTTCTAATTTTAGCTGTGGA TTGGTTTCGCGTGATTTTTCGATTATGTGTTGGGGACCAGGGTGGCCTAATGCTTCAGGGACTCGGCTTCCGTTGGGCGAGGTTTTACCAGGGCCATGTG TGCAATCTTCTTGTAGTGAATGCGGTTTGTATCCGCGATCTGAGAAGTTGTGTTCTGGTTCAGGGAACATTTGCAAGCCTTGTGGTCCCAATGCTTCGAT ATTAACACCGTTGGCTCCGACGTCATTGCCATCAGCACCACCCCCGTCGATAGTGCCAAAGTCATCTCCGTCCAATAAATTGACAACAGGGTTATTGGCA TTTGCTATTGTTGGATCAGTAGGGGGGTTTGCCGGAATTTGCACGATTATTTATTGCTTGTGGACTGGAGTTTGCTTTGGTAAGAAGAAAGTGCATAATT CAGTTCAGCCTACAATTACTAGAGCTGTTTCCATTGCTGGCGTGACATCAAATAATAGTGGTTTAAATTCGAGATCATCAACTATAAGACGCCAGAGCTC AAGGGTGATGAGGCGTCAGAGGAGTGGAACGTCATCAAAGCATGGGGATAGAGCTGAGGAGTTTAGTCTGGCTGAACTTGCTGCTGCTACCAACAATTTT TCAGTAGAGAACAAGATTGGTGCAGGGAGCTTTGGTGTTGTTTATGGAGGGAAATTGAAAGATGGCCGCGAAGTGGCGATTAAGAGAGGGGAAACAGGCC AGAAGATGAAGAAGTTTCAAGAGAAAGAGAGTGCTTTTGAATCAGAATTGGCGTTCTTGTCAAGGCTTCACCACAAACATCTGGTAAGGCTTGCTGGGTA TTGTGAAGATGGAGATGAGAGGCTTCTAGTTTATGATTACATGAAGAATGGAGCTCTTTATGACCATTTACATGACAAGAACAACATTGAAAAGAGTAGC AGTGTGATAAATTCATGGAAAATGAGGATCAAGATTGCACTTGATGCTGCTAGAGGAATTGAATATCTTCACAACTATGCGGTCCCACCAATAATTCACA GAGACATCAAGTCGTCAAATATATTACTCGATGCGAATTGGACAGCAAGAGTTTCTGATTTTGGGTTGTCATTGATGGGTCCTGAATCAGAACAGGATTA CAATTACAGACCAACAAAGGCAGCAGGAACAGTTGGGTACATTGATCCTGAGTACTATGGCCTAAATGTATTAACTGCAAAGAGTGATGTCTATGGCCTT GGTGTGGTATTATTAGAACTCCTGACTGGAAAAAGAGCCATTTTCAAGGGTGATGATAATGGAGGCACACCAACAAGTATAGTGGATTTTGCGGTGCCTA AACTTATGGTTAATGAATTGGGTAAGATTTTGGATCCCAGGGTTGGACCGCCGGAGCTTAATGAAGCAGAAGCAGTGGAGCTGGTGGGATACACTGCAAT GCATTGTGTGAATTTGGAAGGGAAAGATAGGCCAACTATGACAGACATTGTTGCTAACTTGGAGCGAGCCTTGTCCCTCTGTGATGGTAGTAGCCATGGC AGCATCTCTAGTGGTAGAATATCAATTGTTTCAGATTGA
AA sequence Show only first row Show all	>Potri.008G068700.2 pacid=42807862 polypeptide=Potri.008G068700.2.p locus=Potri.008G068700 ID=Potri.008G068700.2.v4.1 annot-version=v4.1 MTKLHLSSAVLSVTTLSLLSFILSSPFLTHALGSGSTLAVISATSTVCGVAASQPSQSITCYRRTPIAEIITVQPNVSFSAISGGSTFFCGLRSGGYAFL CWDTTNSFFESRRVYVNNTALLQNLSVGDNQVCAIVNDTSSVNKTGTVRCWRGDGNASKQSPSEGDKFKSISSGSGFSCGILMENNRIKCWGNNAIAREI ELGFADMIIWNLEVGGLHVCGVNSSGVLVCKGDNRFGQLNVPSNNALEYSQLALGASHSCAIRRNNGSVVCWGGGGEYNVSEIQGVFFESIVSGSNFSCG LVSRDFSIMCWGPGWPNASGTRLPLGEVLPGPCVQSSCSECGLYPRSEKLCSGSGNICKPCGPNASILTPLAPTSLPSAPPPSIVPKSSPSNKLTTGLLA FAIVGSVGGFAGICTIIYCLWTGVCFGKKKVHNSVQPTITRAVSIAGVTSNNSGLNSRSSTIRRQSSRVMRRQRSGTSSKHGDRAEEFSLAELAAATNNF SVENKIGAGSFGVVYGGKLKDGREVAIKRGETGQKMKKFQEKESAFESELAFLSRLHHKHLVRLAGYCEDGDERLLVYDYMKNGALYDHLHDKNNIEKSS SVINSWKMRIKIALDAARGIEYLHNYAVPPIIHRDIKSSNILLDANWTARVSDFGLSLMGPESEQDYNYRPTKAAGTVGYIDPEYYGLNVLTAKSDVYGL GVVLLELLTGKRAIFKGDDNGGTPTSIVDFAVPKLMVNELGKILDPRVGPPELNEAEAVELVGYTAMHCVNLEGKDRPTMTDIVANLERALSLCDGSSHG SISSGRISIVSD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55950		CCR3, ATCRR3	CRINKLY4 related 3 (.1)		Potri.008G068700 [exp]	0	1
AT2G19570		DESZ, AT-CDA1, ...	cytidine deaminase 1 (.1)		Potri.006G150600 [exp]	2.23	0.8132	CDA1.1
AT3G54040			PAR1 protein (.1)		Potri.006G094300 [exp]	10.00	0.8059
AT4G35630		PSAT	phosphoserine aminotransferase...		Potri.005G099900 [exp]	15.49	0.7333
AT4G21380		ARK3	receptor kinase 3 (.1)		Potri.011G037100 [exp]	22.27	0.7316
AT2G20780		AtPLT4	Major facilitator superfamily ...		Potri.004G039100 [exp]	33.94	0.7864
AT1G02500		METK1, AtSAM1, ...	S-ADENOSYLMETHIONINE SYNTHETAS...		Potri.010G153500 [exp]	38.34	0.7696	Pt-SAMS.3,AdoMet3
AT4G36750			Quinone reductase family prote...		Potri.007G029600 [exp]	44.73	0.6983
AT1G30620		MURUS4, HSR8, U...	UDP-D-XYLOSE 4-EPIMERASE 1, MU...		Potri.011G156100 [exp]	48.73	0.7496	MUR4.2
AT2G17760			Eukaryotic aspartyl protease f...		Potri.005G108700 [exp]	66.93	0.7144
AT1G27700			Syntaxin/t-SNARE family protei...		Potri.014G019100 [exp]	73.89	0.7356

Compare expression of checked genes

Potri.008G068700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.