Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55960 342 / 2e-118 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G45700 87 / 1e-19 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G29780 85 / 2e-19 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G29770 86 / 3e-19 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G55900 76 / 1e-15 TIM50, EMB1860 embryo defective 1860, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT5G11860 69 / 5e-13 SSP5 SCP1-like small phosphatase 5 (.1.2.3.4) AT4G18140 69 / 7e-13 SSP4b SCP1-like small phosphatase 4b (.1.2.3) AT5G46410 64 / 2e-11 SSP4 SCP1-like small phosphatase 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G188500 [exp] 474 / 1e-170 AT3G55960 406 / 8e-144 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.006G100800 [exp] 298 / 1e-100 AT3G55960 304 / 6e-103 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.016G116700 [exp] 275 / 4e-92 AT3G55960 248 / 1e-81 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.004G062900 [exp] 90 / 1e-20 AT5G45700 194 / 1e-60 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.011G072000 [exp] 89 / 3e-20 AT5G45700 230 / 5e-75 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.001G364500 [exp] 80 / 9e-17 AT1G55900 405 / 3e-141 embryo defective 1860, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.011G093000 [exp] 78 / 4e-16 AT1G55900 415 / 5e-145 embryo defective 1860, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.001G353700 [exp] 74 / 1e-14 AT5G46410 409 / 2e-138 SCP1-like small phosphatase 4 (.1.2) Potri.011G078300 [exp] 67 / 3e-12 AT5G46410 419 / 1e-143 SCP1-like small phosphatase 4 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009890 [exp] 380 / 2e-133 AT3G55960 445 / 9e-159 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10014844 [exp] 370 / 1e-129 AT3G55960 441 / 2e-157 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10028284 [exp] 330 / 7e-114 AT3G55960 383 / 2e-134 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10002484 [exp] 278 / 4e-93 AT3G55960 333 / 2e-114 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10004810 [exp] 251 / 6e-82 AT3G55960 295 / 3e-99 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10007321 [exp] 89 / 4e-20 AT5G45700 206 / 3e-65 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10029273 [exp] 88 / 7e-20 AT5G45700 211 / 4e-67 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10043165 [exp] 84 / 3e-18 AT1G55900 380 / 2e-131 embryo defective 1860, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10032582 [exp] 84 / 4e-18 AT1G55900 378 / 2e-130 embryo defective 1860, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10004414 [exp] 82 / 2e-17 AT1G55900 411 / 1e-143 embryo defective 1860, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [poplar] [flax] HAD PF03031 [poplar] [flax] NIF NLI interacting factor-like phosphatase
Representative CDS sequence Show only first row Show all	>Potri.008G068800.2 pacid=42806368 polypeptide=Potri.008G068800.2.p locus=Potri.008G068800 ID=Potri.008G068800.2.v4.1 annot-version=v4.1 ATGGCTGAGCTGACTCATCCCGAGGTGGTTTACTCACCACGGTCAATTCAGTTATGGAGGGCACTGTGGAACTGGCTTGCTTTCTTCTTCCAGATCTTTT TACAGATCCTTAGAGCCGTTGGACCTCGATCTCTCTCTACTCCTTCTCATACTTTCAAGCCCTTGCCTCTTGGCGAGTTGCCTGAGACCACCGATCCTCC TCCCGCAACAGTCGAGATCCCCGCCGGCACCGACGCCATTTCCGCCAACGAGCCTATCCAGAAACTCACCGTGGTTCTTGACTTGGATGAAACTCTAGTA TGTGCTTATGAGACATCTAGTTTGCCAGCGCTTCTGTGCAATCAAGCAATGGAAGCTGGATTGAAGTGGTTTGAGCTGGAATGTGTATCTTCAGACAAGG AATGCGAAGGGAAACTTAAGATCAATTATGTTACGGTATTTGAGCGTCCAGGGTTGGATGAATTCCTAAAACAACTCAGTGAATTTGCAGAGCTTGTGCT ATTTACAGCTGGCCTTGAAGGTTATGCCAGACCACTTGTTGACAGAATAGATACAGAAAATCGATTTAGTCTACGTCTTTATCGGCCTTCAACAACTAGC ACGGAGTATCAGGAGCATGTGAAAGATCTCTCCTGCATATCAAATGATCCATGCCGGGTTGTTATTGTTGACAACAATCCATTCAGTTTCTTGTTGCAAC CACTGAATGGAATTCCATGCGTTCCATTTTCTGCAGGACAACCACATGATACACAGCTTCTGGATGTGCTTCTTCCACTCCTCAAGCACCTCTCTCAGCA GAACGATGTGAGACCTGTACTCTCTGAAAGATTCCACATGCTTGAATGGTTTCAGAAGCAGGGAATCCCTGCTTCTGGTTGGACGTAG
AA sequence Show only first row Show all	>Potri.008G068800.2 pacid=42806368 polypeptide=Potri.008G068800.2.p locus=Potri.008G068800 ID=Potri.008G068800.2.v4.1 annot-version=v4.1 MAELTHPEVVYSPRSIQLWRALWNWLAFFFQIFLQILRAVGPRSLSTPSHTFKPLPLGELPETTDPPPATVEIPAGTDAISANEPIQKLTVVLDLDETLV CAYETSSLPALLCNQAMEAGLKWFELECVSSDKECEGKLKINYVTVFERPGLDEFLKQLSEFAELVLFTAGLEGYARPLVDRIDTENRFSLRLYRPSTTS TEYQEHVKDLSCISNDPCRVVIVDNNPFSFLLQPLNGIPCVPFSAGQPHDTQLLDVLLPLLKHLSQQNDVRPVLSERFHMLEWFQKQGIPASGWT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55960			Haloacid dehalogenase-like hyd...		Potri.008G068800 [exp]	0	1
AT1G55730		ATCAX5	cation exchanger 5 (.1.2)		Potri.010G249200 [exp]	2.44	0.8288
AT1G71695			Peroxidase superfamily protein...		Potri.005G195700 [exp]	3.46	0.8244
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Potri.010G138600 [exp]	6.63	0.7485
AT5G57035			U-box domain-containing protei...		Potri.006G147000 [exp]	8.48	0.7817
AT1G27340			Galactose oxidase/kelch repeat...		Potri.001G057100 [exp]	10.86	0.6992
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Potri.017G048900 [exp]	14.00	0.7970
AT3G45240		ATSNAK2, GRIK1	geminivirus rep interacting ki...		Potri.001G010700 [exp]	22.58	0.7779
AT4G14950		KMS1	Killing Me Slowly 1, SNARE ass...		Potri.008G151300 [exp]	23.81	0.7203
AT2G23450			Protein kinase superfamily pro...		Potri.007G034500 [exp]	24.55	0.7786
AT1G45249	bZIP	AtABF2, ATAREB1...	ABSCISIC ACID RESPONSIVE ELEME...		Potri.014G028200 [exp]	24.73	0.7559	Pt-ABF2.1

Compare expression of checked genes

Potri.008G068800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.