Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40120 607 / 0 Protein kinase superfamily protein (.1) AT1G73450 540 / 4e-178 Protein kinase superfamily protein (.1) AT1G73460 539 / 1e-177 Protein kinase superfamily protein (.1) AT3G17750 531 / 3e-175 Protein kinase superfamily protein (.1) AT4G03175 228 / 4e-71 Protein kinase superfamily protein (.1) AT5G35980 210 / 7e-58 YAK1 yeast YAK1-related gene 1 (.1.2) AT3G25840 175 / 4e-46 Protein kinase superfamily protein (.1.2) AT1G13350 172 / 7e-45 Protein kinase superfamily protein (.1.2) AT3G53570 165 / 3e-44 AME2, AFC1 FUS3-complementing gene 1 (.1.2.3.4) AT3G53640 162 / 5e-42 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G188400 [exp] 1226 / 0 AT2G40120 576 / 0.0 Protein kinase superfamily protein (.1) Potri.012G039700 [exp] 547 / 0 AT1G73460 1343 / 0.0 Protein kinase superfamily protein (.1) Potri.015G033400 [exp] 539 / 5e-178 AT1G73460 1356 / 0.0 Protein kinase superfamily protein (.1) Potri.013G075300 [exp] 217 / 1e-59 AT5G35980 1134 / 0.0 yeast YAK1-related gene 1 (.1.2) Potri.019G043400 [exp] 217 / 1e-59 AT5G35980 1088 / 0.0 yeast YAK1-related gene 1 (.1.2) Potri.008G119100 [exp] 186 / 4e-49 AT3G25840 689 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G126900 [exp] 182 / 7e-48 AT3G25840 727 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G244400 [exp] 169 / 7e-46 AT4G32660 634 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.015G085700 [exp] 160 / 6e-43 AT4G24740 747 / 0.0 FUS3-complementing gene 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028283 [exp] 781 / 0 AT2G40120 587 / 0.0 Protein kinase superfamily protein (.1) Lus10040203 [exp] 626 / 0 AT2G40120 590 / 0.0 Protein kinase superfamily protein (.1) Lus10031902 [exp] 544 / 4e-180 AT1G73450 1318 / 0.0 Protein kinase superfamily protein (.1) Lus10042297 [exp] 533 / 2e-175 AT1G73450 1335 / 0.0 Protein kinase superfamily protein (.1) Lus10026360 [exp] 518 / 1e-170 AT1G73460 680 / 0.0 Protein kinase superfamily protein (.1) Lus10031328 [exp] 296 / 5e-96 AT1G73450 405 / 6e-135 Protein kinase superfamily protein (.1) Lus10009542 [exp] 214 / 1e-58 AT5G35980 1147 / 0.0 yeast YAK1-related gene 1 (.1.2) Lus10020366 [exp] 214 / 2e-58 AT5G35980 1159 / 0.0 yeast YAK1-related gene 1 (.1.2) Lus10019458 [exp] 160 / 1e-42 AT4G24740 729 / 0.0 FUS3-complementing gene 2 (.1.2) Lus10024431 [exp] 159 / 3e-42 AT3G53570 732 / 0.0 FUS3-complementing gene 1 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.008G069000.2 pacid=42806535 polypeptide=Potri.008G069000.2.p locus=Potri.008G069000 ID=Potri.008G069000.2.v4.1 annot-version=v4.1 ATGGCGGGACCAGAAGCAGAAACAGGACGAGCAGTCCCGGACGTGGAAGCAGTGCTGGATTTTCTACGCAAAAATGGTTTAAGGGACGCAGAGTTGGCTC TTAAAGAGGACATGATCGAGAGAAGTAATGAACTGGGCTCCTTCGACTTTGAGAAGTTCTTGTTTGTATTGCCACCCGTGAGGGTTCCGGCGAGTGTCCG GCCGCTGGATGTGGAAGAAGGTGGTGGCGCCGTTGAGAGGCTGAGATCGAGTTCTGGGTCTCCGTCGGACGATGAGTTTGTTAGCTTGGGGTCTTCTACC AGTGCTAGTGAAGTGTACTCTTCAGAATTCTCAAATCCATATGGACTTCATTCCACATCGCAGGCTAATTCAGAAACTTCATCTGACAGGCTCTCTCAGT TTGGCACAGCACGTGATTACCCAGATTTCGATATGCAAAATGACTCTTATTGGTATGATGAGAAAGAGGAAGGGCACTTCATGAGTCCCTGCTTCAATGG CCCAGACTACTTTGGCTGTCCAAGCGAGGATAAGTTTGTCATGACATCTGAGACTGGGAAGCAATTTGAGAATTCCTTGGGCTTGTATGATAAATCTGAA GGTGAAACACAAGGAAACATCGATTACTTGGATAAGCAGTGTCTTTACAATGTCACATCTGTGAATAATAAAAACGAGGCTCAATCTATGAATTATCATC ATGATTTTGATAAAAAAAACCAGCTTGAAGGAGACATTGATAGGGACGGTAGTTCAGCCCACAATTGCAAATTCTTCACAGAAACAGGAGGGATTTATGG CAAGAATTCTGTTGACTGTATCTATACGAGCTCCAAGGGACCTGATTTAGGTGACTTTCAGTTAAAAGTTGGGGAAAGCCCTACTGATTATGATACAGTT CCTGTGCATATGGAAAACAAGAATGCTAACTACTATGGTATAAAAGGTTCCAAAAGTGACTGGATTGAAGGGTTTAAAAGTACCTCTGGCATTGTAGAAA ATGGAATTGATGACTTTGAAGTTGGAGATGGTGGAGGAGTAAATGGAGAAGCCCATGAGCTTGCAGCTGCTATTGGTGGAGAAGATGTTAATGCTAACGA ACTTTTGATGTACTATAACCAGGAGGATGAATATGAAGTTTTCAATCTGCGAGTTATACACAGGAAAAACAGGACTGGATTCGAGGAAAACAAGGATCTG CCTATTGTGCTAAATACTGTCATTGCAGGCAGATATTATGTCACTGAATACCTAGGTTCAGCTGCTTTCAGTAAGGTCATTCAGGCACATGATCTTCATA CAGGAATAGATGTTTGCCTGAAGATTATTAAAAATGACAAAGATTTTTTCGATCAGAGTCTAGATGAAATTAAGCTTCTGAAAATAGTGAACAAGCTTGA TCCGGCTGATGAACGTCACATTCTGCGCCTTTATGACTACTTCTATCACCAAGAGCATCTCTTCATCGTTTGTGAACTCCTTAAGGCGAACTTGTATGAA TTTCAGAAATTTAATCAAGAATCAGGTGGTGAAGCTTACTTCACTCTCAGCAGATTGCAGGTCATAACCCGTCAGTGTGTGGAGGCACTAGAATACTTGC ATGACTTGGGAATTATTCACTGTGATTTAAAGCCCGAAAACATTCTTATAAAGAGTTATAGGAAATGCGAGATAAAGGTTATTGATCTTGGAAGCAGTTG CTTTAAGTCGGACAACTTATGCCTATATGTACAATCTCGTTCCTATAGAGCCCCTGAAGTCATTCTAGGTCTCCCCTATGACCAAAAGATTGACTTATGG TCTCTCGGCTGCATCTTGGCTGAACTGTGCTCTGGGGAAGTGCTCTTTCCAAATGATGCAGTTGTAATGATCCTCACGCGCATGATTGGCATGCTGGGTC CTCTTGATCCAGAGATGCTGGAGACAGGACAGGAAACGCACAAGTACTTTACAGAAGAATATGATCTCTATCATTTAAATGAGGAGACAAATCAAGTAGA ATACCTTATTCCTGAGGAATCCTCACTGGAACATCATCTACAAGTTTCCGACGTTGGGTTCATTGATTTCGTGAGAGACTTGCTTGAGCTCAACCCCCTG AGGCGTCCAACTGCAAGGGAGGCCCTAGAGCACCCATGGCTTTCACATTCATACTGA
AA sequence Show only first row Show all	>Potri.008G069000.2 pacid=42806535 polypeptide=Potri.008G069000.2.p locus=Potri.008G069000 ID=Potri.008G069000.2.v4.1 annot-version=v4.1 MAGPEAETGRAVPDVEAVLDFLRKNGLRDAELALKEDMIERSNELGSFDFEKFLFVLPPVRVPASVRPLDVEEGGGAVERLRSSSGSPSDDEFVSLGSST SASEVYSSEFSNPYGLHSTSQANSETSSDRLSQFGTARDYPDFDMQNDSYWYDEKEEGHFMSPCFNGPDYFGCPSEDKFVMTSETGKQFENSLGLYDKSE GETQGNIDYLDKQCLYNVTSVNNKNEAQSMNYHHDFDKKNQLEGDIDRDGSSAHNCKFFTETGGIYGKNSVDCIYTSSKGPDLGDFQLKVGESPTDYDTV PVHMENKNANYYGIKGSKSDWIEGFKSTSGIVENGIDDFEVGDGGGVNGEAHELAAAIGGEDVNANELLMYYNQEDEYEVFNLRVIHRKNRTGFEENKDL PIVLNTVIAGRYYVTEYLGSAAFSKVIQAHDLHTGIDVCLKIIKNDKDFFDQSLDEIKLLKIVNKLDPADERHILRLYDYFYHQEHLFIVCELLKANLYE FQKFNQESGGEAYFTLSRLQVITRQCVEALEYLHDLGIIHCDLKPENILIKSYRKCEIKVIDLGSSCFKSDNLCLYVQSRSYRAPEVILGLPYDQKIDLW SLGCILAELCSGEVLFPNDAVVMILTRMIGMLGPLDPEMLETGQETHKYFTEEYDLYHLNEETNQVEYLIPEESSLEHHLQVSDVGFIDFVRDLLELNPL RRPTAREALEHPWLSHSY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40120			Protein kinase superfamily pro...		Potri.008G069000 [exp]	0	1
AT5G45290			RING/U-box superfamily protein...		Potri.001G127100 [exp]	1.41	0.9411
AT3G06550		RWA2	REDUCED WALL ACETYLATION 2, O-...		Potri.010G148500 [exp]	3.60	0.9049
AT5G26780		SHM2	serine hydroxymethyltransferas...		Potri.002G109200 [exp]	4.24	0.9321	SHMT3
AT2G32850			Protein kinase superfamily pro...		Potri.001G228100 [exp]	5.91	0.9161
AT5G23720		PHS1	PROPYZAMIDE-HYPERSENSITIVE 1, ...		Potri.015G105000 [exp]	6.32	0.8944	Pt-PHS1.2
AT2G40120			Protein kinase superfamily pro...		Potri.010G188400 [exp]	7.48	0.9206
AT2G47010			unknown protein		Potri.019G076900 [exp]	9.16	0.9042
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Potri.014G017500 [exp]	9.16	0.8943
AT5G51400			PLAC8 family protein (.1)		Potri.001G124500 [exp]	9.74	0.8444
AT3G14170			Plant protein of unknown funct...		Potri.003G070200 [exp]	9.94	0.9116

Compare expression of checked genes

Potri.008G069000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.