Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29970 610 / 0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT1G07200 600 / 0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G40130 416 / 6e-134 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G57710 193 / 4e-50 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT4G30350 159 / 1e-39 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT3G52490 136 / 2e-32 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT4G29920 103 / 5e-22 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT5G57130 103 / 6e-22 Clp amino terminal domain-containing protein (.1) AT5G50920 67 / 7e-11 CLPC1, CLPC, ATHSP93-V, HSP93-V, DCA1 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) AT3G48870 67 / 8e-11 ClpC2, ATCLPC, ATHSP93-III, HSP93-III ClpC2, Clp ATPase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G188200 [exp] 1836 / 0 AT1G07200 624 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G252500 [exp] 808 / 0 AT2G29970 668 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G046700 [exp] 808 / 0 AT2G29970 658 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.018G097300 [exp] 183 / 6e-47 AT5G57710 998 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.018G140900 [exp] 173 / 7e-44 AT5G57130 751 / 0.0 Clp amino terminal domain-containing protein (.1) Potri.006G175200 [exp] 172 / 1e-43 AT5G57710 913 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G073800 [exp] 164 / 7e-41 AT4G29920 693 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G204500 [exp] 152 / 2e-37 AT3G52490 852 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.016G071800 [exp] 138 / 4e-33 AT3G52490 785 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040206 [exp] 879 / 0 AT2G40130 569 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10028281 [exp] 711 / 0 AT1G07200 407 / 3e-127 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10038320 [exp] 376 / 6e-113 AT2G29970 696 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10036183 [exp] 280 / 4e-79 AT2G29970 566 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10019984 [exp] 192 / 6e-50 AT5G57710 912 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015511 [exp] 188 / 2e-48 AT5G57710 899 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10008902 [exp] 129 / 3e-30 AT5G57710 392 / 3e-124 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10021291 [exp] 112 / 9e-25 AT3G52490 690 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10023201 [exp] 111 / 2e-24 AT5G57710 404 / 1e-127 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10020886 [exp] 104 / 3e-22 AT5G57710 226 / 2e-61 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G069100.1 pacid=42807837 polypeptide=Potri.008G069100.1.p locus=Potri.008G069100 ID=Potri.008G069100.1.v4.1 annot-version=v4.1 ATGCCGACGCCGGTAACAACAGCAAGGCAATGCTTGACTGAAGAAGCAGCTCACGCTCTCGACGAGGCAGTGAACGTCGCACGCAGAAGAGGACATGGCC AGACCACGTCGCTTCATGCCGTCTCGGCTCTGTTATCACTCCCTTCGTCACCTCTACGCGAAGCGTGTGCGCGTGCGAGGAACTCTGCGTACTCACCGCG ACTCCAATTCAAAGCGCTCGAGCTCTGCCTCGGGGTGTCACTCGACCGAGTGCCGACGAGTCAACTCGGTGATGACTCACCTCCTGTTTCGAACTCGCTC ATGGCTGCTATTAAGCGTTCGCAAGCGAACCAGAGGAGACAGCCGGAGAATTTCAATTTGTATCATCAAATTCAACAGCAGCAGCAATCGTCTTCTTCGA TTTCGTGTATTAAAGTGGAGCTTCAGAACCTGATTCTATCGATTTTGGATGATCCGGTTGTGAGCCGGGTTTTCGGTGAAGCGGGATTTCGGAGCTCGGA AATCAAGTTGGCTATTGTTAGACCGTTGCCTCAGGTTTTTAAATTCCCATCCTCACGTTTCAAAGGCCCGCCCTTGTTTTTATGCAATATATTATCAAGT GAGGATCCGGATTCGTTGTACTCGTGTCCGGGTCGGAGCGGTGTTTTTAGTTTTCCATTTTCGGGCGGGTCGTTCCTTAATAATAACAACAGCAGTCATA GTACTACTAATAGGGATGTTAATTGTCGGAGGATTGGTGAGGTTCTAGCGAGCAGCAGAGGGAGGAATCCTCTGCTTGTAGGTTCAGGTGCTTACGATAC ACTTGCAATTTTTAGTGAGATAGTAGAGAAAAGAAAAGAGAATATCTTGCCTGTGGAGTTACGTGGGTTAAGTGTTATTTGCATTGAAAGCTATGTTAAC AAGTTTATTACAAGTGAGGATTTTGATAAAAAGAGAGTGGATTTGAGGTTTGAGGAGTTGGGTCAGTTTGCGGAGAGGCATTTGGGACCTGGGTTGCTGG TGAATTTTGGTGACTTGAAGGCATTTGTTAGTGACGACAGTGATAATAATGGTTTGGGTGATGCAGCTAGTTATGTTATTGAGAAACTGACCAAGCTGTT GCAGTTATATGGAGGGAGGGTGTGGCTTATCGGTGCGGCGAGTTATGAGAACTATTCCAAGTTTGTTGGAAGATTTCCTTCCACTGAAAAGGATTGGGAT TTGCAGCTCTTGCCTATCACTTCTCTCCCGACTTCTTCCATGGCTGAATCTTACCCCAGGTCAAGCTTGATGGAGTCATTTGTTCCATTTGGCGGGTTCT TCTCCACACCTTCTGACTTGAATGGCCCTTTAAATACCCCATACCATTGTATACCCCTTTGTCATCTATGCAATGAGAAGTGCAAACAAGAAATACTTTC TGTTTCAAAGGGAGGATTTGTCGGCTCAGTAGCAGACCATTACCAATCTAGCTTACCTTCTTGGCTGCAGATGGCTGAAATCGGCACTAACAAGGGACTG GATGCGAAGACCAGAGATGATGGAACGGTATTGAGTGCCAAAGTTGCAGGTCTGCAAAGGAAATGGGACAATATATGTCAGCGTCTTCATCACACCCAGC CACCTGGGTTAAACACTCATCTCCCTCAGTTTCCAACTGTTGCGGGCTTTCAGCTGGTTGAAGACAAAAAGGAAAATGCTGAAAATCCTAGAAGCAAAAA TACAAGTGCACTGCCAAATGGAAGCAGATGTGTGAATGTAAATTCATGCATTCCCTCTGACATACAAAAGACACCGAGAAAGCAATTAGGTTTTCCTCTT CCTATTGTTTCTGAGGCTAAGAGTGATTGTATTCTATCCAAGCAACGGGAAAAACCTTCAAAAGAAGAAGATCTTGAGTCTGGTGGCTTCAGTTCTCCAC AGAATTTCTCCAATTCGAGCATAGTTGATGGCAGTCAAGCATCTCCAACATCCATGACTTCTGTGACCACAGATTTGGGCTTGAGAATAAGTTCCGTCCC TACTAGTAATGAACTGAAGAAAACTGTAAATCAAAACCACATGGAGCTTCCACAGGACCGATCAGGTTCCTTTTCAGCAAATGTTGATGTTGTGCATGGG AGTATGTCTGACCATTGGGCTCCATCATCATCATCATCTTCTTCTCCTGACTACGGCGGGCAGTTTGATCTCAGCAATGCCAAGATGCTCTTTAGAGCTG TCGTTGAAAGGGTTGGCTGGCAAGATGAAGCTATACGCGTTATTAGCCAAACAATAGCTCGCTGCAAGGCAAGAAATGAGAAACGACAGGGGGCAAGTCT CAGAGGGGATATATGGTTCAGTTTCTGTGGACCTGATAGGCGTGGGAAAAAGAAAATTGCTTCTGCCCTTGCAGAAATCATATATGGAAGCAGGGAGAAC TTTATTTCTGCAGATTTAAGTGCCCAAGATGGGATGATCCATACCCACATGCTCTTTGACCACCCAGAGGTGAATGGCTACACTGCAAAGTTAAGGGGGA AGACTGTGGTTGATTTTGTTGCCGGGGAGCTGTGCAAGAAACCCTTGTCTATTGTGTTTCTTGAAAATATAGACAAGGCTGATGTGCAGGCTCAAAAGAG CTTGTCACATGCTATTCAGACTGGTAAATTTGCAGATTCTCATGGGAGAGAAATTGGAATCAGCAATGCAATATTCGTGACAACTTCAACATTGACGGAG GATAAAGTTTGCTCTTCTAGTAATGAGTTCTTCACCTATTCCGAGGAGAGAATATCAAGAGTCAGGGACTGGCCAGTGAAGATATTAATTGAACAAGCTC TTGATGACGAAGTAGGCAAAATGGTTGCTCCATTCACACTGAGAAAAGGCGTCTCTGGTTCTATCTTTTTGAATAAAAGAAAGCTGGTTGGGGCAAATCA AAATCTAGACAGACAAGAAATCAAAGAGATGGTGAAACGAGCTCATAAGACGTCAGCTAGGAATCTAGATCTGAACCTTCCTGCAGAAGAGAATGATGTG CTAGACACTGACGATGGAAGCTCTGATAATGATCATGCATCTGACAACTCCAAGGCTTGGTTGCAAGATTTTCTTGAAAAAATTGACGCAAGAGTGTTTT TCAAGCCTTTTGATTTTGATGCTCTTGCTGAAAGAATATTGAATGAACTTAATGGGTGCTTCCACAAGATTGTAGGTTCGGAATGCTTGCTAGATATTGA TCCAAAAGTCACGGAGCAGTTACTCGCAGCTGCGTATTTATCTGATCGGAAGAGAGTGGTTGAGGATTGGGTGGAGCAAGTTCTTGGTTGGGGATTTGTT GAAGTTTTGAGAAGGTACAAACTGAAAGCAAATTCCATTGTGAAACTTGTTGCCTGCAAGGGCTTGTTTGTAGAAGAGCGCATGTCAGGAGATCACCTTC CAACAAAAATTATAATCAGCTGA
AA sequence Show only first row Show all	>Potri.008G069100.1 pacid=42807837 polypeptide=Potri.008G069100.1.p locus=Potri.008G069100 ID=Potri.008G069100.1.v4.1 annot-version=v4.1 MPTPVTTARQCLTEEAAHALDEAVNVARRRGHGQTTSLHAVSALLSLPSSPLREACARARNSAYSPRLQFKALELCLGVSLDRVPTSQLGDDSPPVSNSL MAAIKRSQANQRRQPENFNLYHQIQQQQQSSSSISCIKVELQNLILSILDDPVVSRVFGEAGFRSSEIKLAIVRPLPQVFKFPSSRFKGPPLFLCNILSS EDPDSLYSCPGRSGVFSFPFSGGSFLNNNNSSHSTTNRDVNCRRIGEVLASSRGRNPLLVGSGAYDTLAIFSEIVEKRKENILPVELRGLSVICIESYVN KFITSEDFDKKRVDLRFEELGQFAERHLGPGLLVNFGDLKAFVSDDSDNNGLGDAASYVIEKLTKLLQLYGGRVWLIGAASYENYSKFVGRFPSTEKDWD LQLLPITSLPTSSMAESYPRSSLMESFVPFGGFFSTPSDLNGPLNTPYHCIPLCHLCNEKCKQEILSVSKGGFVGSVADHYQSSLPSWLQMAEIGTNKGL DAKTRDDGTVLSAKVAGLQRKWDNICQRLHHTQPPGLNTHLPQFPTVAGFQLVEDKKENAENPRSKNTSALPNGSRCVNVNSCIPSDIQKTPRKQLGFPL PIVSEAKSDCILSKQREKPSKEEDLESGGFSSPQNFSNSSIVDGSQASPTSMTSVTTDLGLRISSVPTSNELKKTVNQNHMELPQDRSGSFSANVDVVHG SMSDHWAPSSSSSSSPDYGGQFDLSNAKMLFRAVVERVGWQDEAIRVISQTIARCKARNEKRQGASLRGDIWFSFCGPDRRGKKKIASALAEIIYGSREN FISADLSAQDGMIHTHMLFDHPEVNGYTAKLRGKTVVDFVAGELCKKPLSIVFLENIDKADVQAQKSLSHAIQTGKFADSHGREIGISNAIFVTTSTLTE DKVCSSSNEFFTYSEERISRVRDWPVKILIEQALDDEVGKMVAPFTLRKGVSGSIFLNKRKLVGANQNLDRQEIKEMVKRAHKTSARNLDLNLPAEENDV LDTDDGSSDNDHASDNSKAWLQDFLEKIDARVFFKPFDFDALAERILNELNGCFHKIVGSECLLDIDPKVTEQLLAAAYLSDRKRVVEDWVEQVLGWGFV EVLRRYKLKANSIVKLVACKGLFVEERMSGDHLPTKIIIS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G29970			Double Clp-N motif-containing ...		Potri.008G069100 [exp]	0	1
AT1G07200			Double Clp-N motif-containing ...		Potri.010G188200 [exp]	1.00	0.9138
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Potri.001G049100 [exp]	2.44	0.8778
AT4G27220			NB-ARC domain-containing disea...		Potri.005G061860 [exp]	8.36	0.8157
AT3G54450			Major facilitator superfamily ...		Potri.001G027100 [exp]	9.74	0.8426
AT1G31490			HXXXD-type acyl-transferase fa...		Potri.001G128100 [exp]	11.53	0.8336
AT1G59740			Major facilitator superfamily ...		Potri.004G229000 [exp]	12.24	0.7730
AT1G63440		HMA5	heavy metal atpase 5 (.1)		Potri.001G105800 [exp]	12.48	0.7803
AT4G27220			NB-ARC domain-containing disea...		Potri.005G062130 [exp]	13.85	0.7455
AT4G27290			S-locus lectin protein kinase ...		Potri.011G154400 [exp]	14.69	0.8188
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Potri.017G074000 [exp]	14.69	0.8109

Compare expression of checked genes

Potri.008G069100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.